Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30176 * 126.80009 * 2 1 4 4 O 1.20919 * 111.60459 * 179.68714 * 3 2 1 5 5 C 1.34048 * 111.56504 * 0.45119 * 4 3 2 6 6 C 1.50699 * 126.77666 * 179.82675 * 5 4 3 7 7 H 1.09002 * 109.46959 * 179.68699 * 6 5 4 8 8 C 1.53000 * 109.47083 * 59.68484 * 6 5 4 9 9 N 1.46901 * 109.46818 * 65.00393 * 8 6 5 10 10 C 1.52997 * 109.47078 * 299.68611 * 6 5 4 11 11 C 1.50705 * 109.47390 * 184.99841 * 10 6 5 12 12 H 1.08000 * 119.99498 * 0.02562 * 11 10 6 13 13 C 1.37870 * 120.00441 * 180.02562 * 11 10 6 14 14 N 1.31513 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46926 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46855 * 119.99990 * 15 13 11 18 18 H 1.48496 * 109.46967 * 239.99783 * 15 13 11 19 19 C 1.35452 * 106.44247 * 359.56604 * 5 4 3 20 20 C 1.50703 * 128.00094 * 180.24091 * 19 5 4 21 21 H 1.08993 * 109.47612 * 270.04270 * 1 2 3 22 22 H 1.09008 * 109.46808 * 30.04433 * 1 2 3 23 23 H 1.09000 * 109.47074 * 150.04025 * 1 2 3 24 24 H 1.09002 * 109.47069 * 184.99715 * 8 6 5 25 25 H 1.08991 * 109.47625 * 305.00034 * 8 6 5 26 26 H 1.00900 * 111.00172 * 180.02562 * 9 8 6 27 27 H 1.00901 * 111.00083 * 303.94749 * 9 8 6 28 28 H 1.09001 * 109.47630 * 305.00104 * 10 6 5 29 29 H 1.09004 * 109.47346 * 65.00234 * 10 6 5 30 30 H 0.97002 * 119.99729 * 180.02562 * 14 13 11 31 31 H 1.08995 * 109.47144 * 90.00311 * 20 19 5 32 32 H 1.09000 * 109.46717 * 209.99781 * 20 19 5 33 33 H 1.09001 * 109.47175 * 329.99286 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0061 5 6 3.6024 -0.6068 0.0013 6 6 4.9022 -1.3695 0.0027 7 1 4.6954 -2.4397 0.0034 8 6 5.7062 -1.0046 1.2522 9 7 4.9863 -1.4615 2.4485 10 6 5.7079 -1.0065 -1.2462 11 6 6.9495 -1.8583 -1.3083 12 1 7.1442 -2.5862 -0.5345 13 6 7.8368 -1.7086 -2.3528 14 7 7.5995 -0.8226 -3.2953 15 14 9.3755 -2.7650 -2.4301 16 1 9.4082 -3.6782 -1.2595 17 1 9.3643 -3.5650 -3.6811 18 1 10.5767 -1.8922 -2.4114 19 6 2.3539 -1.1320 0.0009 20 6 1.9591 -2.5864 0.0012 21 1 -0.3634 0.0008 1.0276 22 1 -0.3633 0.8897 -0.5146 23 1 -0.3633 -0.8903 -0.5132 24 1 6.6828 -1.4870 1.2096 25 1 5.8368 0.0765 1.2975 26 1 5.4971 -1.2317 3.2877 27 1 4.0533 -1.0784 2.4773 28 1 5.1011 -1.1834 -2.1343 29 1 5.9907 0.0453 -1.2032 30 1 8.2236 -0.7175 -4.0304 31 1 1.8633 -2.9366 1.0289 32 1 1.0053 -2.7040 -0.5131 33 1 2.7230 -3.1703 -0.5121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = 12.860599 kcal Electronic energy + Delta-G solvation = -15603.191513 eV Core-core repulsion = 13051.377029 eV Total energy + Delta-G solvation = -2551.814483 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.81274 -38.05928 -36.19613 -34.87971 -33.50884 -31.86348 -29.62864 -28.87376 -27.34160 -24.73168 -23.21690 -22.53344 -20.18035 -18.69404 -18.50759 -17.53552 -16.82755 -16.52384 -15.93757 -15.42081 -14.66147 -14.35990 -14.30037 -14.09474 -13.80387 -13.75707 -13.62160 -13.15724 -13.04595 -12.82799 -12.62606 -12.28967 -12.11101 -11.81083 -11.59092 -11.17706 -10.76634 -10.56851 -9.94093 -9.61442 -8.18600 -6.29849 0.53536 1.31278 1.43676 1.44628 1.57697 2.23428 2.43671 3.15592 3.33872 3.52084 3.68164 3.94914 4.14572 4.30592 4.33939 4.55544 4.67949 4.69073 4.83411 4.87557 4.95041 4.98278 5.05119 5.13187 5.21044 5.41881 5.47601 5.58832 5.79852 6.15504 6.17971 6.58884 6.85365 7.32710 7.39868 8.93893 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.007271 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.837165 B = 3849.748436 C = 4064.355717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.019 3.981 3 N -0.406 5.406 4 O 0.060 5.940 5 C -0.020 4.020 6 C 0.010 3.990 7 H 0.105 0.895 8 C 0.082 3.918 9 N -0.841 5.841 10 C 0.038 3.962 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.965 3.035 16 H -0.256 1.256 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.210 4.210 20 C -0.069 4.069 21 H 0.098 0.902 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.015 0.985 26 H 0.351 0.649 27 H 0.335 0.665 28 H -0.011 1.011 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 -3.209 9.339 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.141 4.141 3 N -0.118 5.118 4 O 0.002 5.998 5 C -0.083 4.083 6 C -0.010 4.010 7 H 0.123 0.877 8 C -0.049 4.049 9 N -0.371 5.371 10 C 0.001 3.999 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.790 3.210 16 H -0.179 1.179 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.214 4.214 20 C -0.126 4.126 21 H 0.117 0.883 22 H 0.094 0.906 23 H 0.121 0.879 24 H 0.103 0.897 25 H 0.033 0.967 26 H 0.164 0.836 27 H 0.147 0.853 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.346 -2.553 8.892 14.640 hybrid contribution 0.969 0.385 -0.417 1.123 sum -10.377 -2.168 8.474 13.572 Atomic orbital electron populations 1.20324 0.83025 1.04688 1.04679 1.24166 1.00557 0.88108 1.01244 1.73800 0.89616 1.25687 1.22656 1.84746 1.21932 1.23982 1.69138 1.24831 0.99179 0.82918 1.01375 1.19905 0.86692 0.97743 0.96625 0.87703 1.21621 0.97722 0.96836 0.88728 1.58778 1.06549 1.67200 1.04541 1.18947 0.94171 0.95654 0.91169 1.21567 1.05929 1.20488 1.08610 0.90837 1.25975 1.01858 0.96697 0.95231 1.70133 1.38303 1.36325 1.12851 0.85388 0.78548 0.78587 0.78484 1.17916 1.20735 1.20788 1.21413 0.90495 0.99495 1.10002 1.20173 1.02445 0.86280 1.03678 0.88323 0.90607 0.87946 0.89692 0.96670 0.83591 0.85346 0.99233 0.99036 0.92875 0.89246 0.89139 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.39 71.24 0.74 -0.64 16 2 C 0.02 0.58 7.33 43.58 0.32 0.90 16 3 N -0.41 -15.44 12.07 -49.57 -0.60 -16.04 16 4 O 0.06 2.51 11.20 71.56 0.80 3.31 16 5 C -0.02 -0.77 5.03 25.04 0.13 -0.64 16 6 C 0.01 0.41 2.42 -11.54 -0.03 0.38 16 7 H 0.11 4.13 7.10 -2.39 -0.02 4.11 16 8 C 0.08 3.00 6.12 86.30 0.53 3.52 16 9 N -0.84 -24.27 9.62 -186.72 -1.80 -26.07 16 10 C 0.04 2.01 4.43 29.85 0.13 2.14 16 11 C -0.53 -28.68 8.34 25.60 0.21 -28.46 16 12 H 0.07 3.75 7.08 -2.91 -0.02 3.73 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.94 -56.83 13.29 21.44 0.28 -56.54 16 15 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C -0.21 -6.68 6.32 -19.74 -0.12 -6.80 16 20 C -0.07 -1.63 10.06 71.24 0.72 -0.92 16 21 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.10 1.54 7.66 -2.39 -0.02 1.52 16 24 H 0.08 3.30 6.82 -2.39 -0.02 3.28 16 25 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.35 8.38 9.08 -89.69 -0.81 7.56 16 27 H 0.33 9.40 8.07 -89.69 -0.72 8.67 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.66 7.66 -2.39 -0.02 1.64 16 33 H 0.06 1.66 7.40 -2.39 -0.02 1.64 16 Total: -1.00 -66.48 280.96 3.39 -63.09 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.41 Total: 17.00 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.09 Total: -30.06 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -2.11 Total: -98.66 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.80 Total: 3.31 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.48 3.39 -63.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.952 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds