Wall clock time and date at job start Mon Mar 30 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 C 1.52997 * 109.46883 * 240.00101 * 2 1 3 5 5 C 1.50699 * 109.47111 * 120.00461 * 2 1 3 6 6 C 1.35447 * 126.77919 * 59.99338 * 5 2 1 7 7 C 1.41385 * 103.98440 * 179.97438 * 6 5 2 8 8 C 1.50703 * 126.79986 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47058 * 4.99795 * 8 7 6 10 10 N 1.46902 * 109.46759 * 245.00074 * 8 7 6 11 11 C 1.50699 * 109.46836 * 125.00076 * 8 7 6 12 12 H 1.07994 * 120.00218 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99996 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99763 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47236 * 90.00387 * 15 13 11 17 17 H 1.48502 * 109.47105 * 210.00181 * 15 13 11 18 18 H 1.48502 * 109.47468 * 330.00054 * 15 13 11 19 19 N 1.30172 * 106.39687 * 0.02562 * 7 6 5 20 20 O 1.20924 * 111.60656 * 359.97438 * 19 7 6 21 21 H 1.09000 * 109.46873 * 299.99745 * 1 2 3 22 22 H 1.09008 * 109.47109 * 59.99679 * 1 2 3 23 23 H 1.09002 * 109.47472 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47274 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46785 * 300.00215 * 3 2 1 26 26 H 1.08995 * 109.46987 * 59.99803 * 3 2 1 27 27 H 1.09002 * 109.47362 * 299.99870 * 4 2 1 28 28 H 1.09004 * 109.47317 * 59.99750 * 4 2 1 29 29 H 1.09000 * 109.47474 * 179.97438 * 4 2 1 30 30 H 1.08001 * 128.00625 * 0.23336 * 6 5 2 31 31 H 1.00902 * 110.99659 * 176.04897 * 10 8 7 32 32 H 1.00895 * 111.00033 * 299.99926 * 10 8 7 33 33 H 0.96999 * 119.99703 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7105 1.2304 6 6 1.7912 -1.9968 1.5793 7 6 2.4844 -2.1551 2.8014 8 6 2.5578 -3.4034 3.6425 9 1 2.0590 -4.2215 3.1229 10 7 1.8944 -3.1650 4.9313 11 6 4.0014 -3.7649 3.8798 12 1 4.7871 -3.1519 3.4636 13 6 4.3191 -4.8778 4.6293 14 7 3.3622 -5.6240 5.1366 15 14 6.1084 -5.3256 4.9241 16 1 6.5873 -4.6614 6.1629 17 1 6.2323 -6.7980 5.0724 18 1 6.9283 -4.8736 3.7714 19 7 3.0458 -1.0087 3.0565 20 8 2.8063 -0.1942 2.1954 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1393 29 1 3.1300 -0.7209 -1.2496 30 1 1.2081 -2.7326 1.0453 31 1 1.8734 -4.0062 5.4882 32 1 2.3387 -2.4105 5.4326 33 1 3.5858 -6.4072 5.6635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:30 Heat of formation + Delta-G solvation = 36.446315 kcal Electronic energy + Delta-G solvation = -15548.552035 eV Core-core repulsion = 12997.760306 eV Total energy + Delta-G solvation = -2550.791730 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.05919 -37.12182 -35.27356 -32.59380 -30.72779 -29.87765 -27.34604 -27.29738 -26.10370 -23.34145 -22.47852 -20.99396 -18.19613 -16.85506 -16.63282 -16.24103 -14.87559 -14.57758 -14.08403 -14.03217 -13.88209 -12.99601 -12.84562 -12.38506 -12.37549 -12.26977 -11.69920 -11.35131 -11.25920 -11.05876 -10.91715 -10.91348 -10.80245 -10.32443 -10.00385 -9.89885 -9.15153 -8.66218 -8.58609 -7.24682 -6.11758 -4.26132 2.22680 3.21945 3.26637 3.30516 3.36905 3.70287 4.33064 4.69860 4.92450 4.98076 5.12675 5.31894 5.35471 5.57179 5.59072 5.75232 5.79683 5.83843 5.84747 6.02666 6.05428 6.17783 6.27012 6.35590 6.42608 6.64131 6.94799 7.51769 7.74868 8.04191 8.62982 8.89503 9.09575 9.26568 9.44970 10.87488 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044990 B = 0.006746 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.216372 B = 4149.725713 C = 4307.965817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.050 4.050 6 C -0.224 4.224 7 C 0.073 3.927 8 C 0.278 3.722 9 H 0.056 0.944 10 N -0.848 5.848 11 C -0.541 4.541 12 H 0.056 0.944 13 C 0.066 3.934 14 N -0.895 5.895 15 Si 0.901 3.099 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.368 5.368 20 O 0.084 5.916 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.158 0.842 31 H 0.358 0.642 32 H 0.317 0.683 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 9.255 -10.714 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.115 4.115 6 C -0.246 4.246 7 C -0.087 4.087 8 C 0.167 3.833 9 H 0.074 0.926 10 N -0.378 5.378 11 C -0.582 4.582 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.535 5.535 15 Si 0.728 3.272 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.074 5.074 20 O 0.021 5.979 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.176 0.824 31 H 0.175 0.825 32 H 0.126 0.874 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.557 9.707 -10.056 14.701 hybrid contribution 1.489 -1.213 0.132 1.926 sum -3.068 8.494 -9.925 13.419 Atomic orbital electron populations 1.21904 0.92785 1.02700 1.02179 1.18995 0.95597 0.94889 0.88691 1.21861 1.01798 0.94244 1.02201 1.21909 1.01691 1.00572 0.95466 1.24159 0.98567 0.94236 0.94506 1.22332 1.06700 0.96551 0.99033 1.24208 0.93593 0.95723 0.95137 1.17429 0.93453 0.85304 0.87065 0.92611 1.59410 1.57997 1.12670 1.07759 1.21807 0.92604 1.10592 1.33159 0.92524 1.25000 0.97970 0.95478 0.95229 1.69735 1.31842 1.16815 1.35088 0.86451 0.84578 0.77444 0.78716 1.20517 1.20998 1.19883 1.73774 1.21423 1.01792 1.10416 1.84800 1.52142 1.36293 1.24688 0.92137 0.91756 0.91943 0.91970 0.92029 0.91954 0.91931 0.91747 0.92138 0.82394 0.82518 0.87421 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.36 37.16 0.31 -1.15 16 2 C 0.02 0.24 0.94 -155.66 -0.15 0.09 16 3 C -0.14 -1.55 8.08 37.16 0.30 -1.25 16 4 C -0.14 -1.49 8.36 37.16 0.31 -1.18 16 5 C -0.05 -0.86 5.77 -35.31 -0.20 -1.07 16 6 C -0.22 -4.36 10.55 -39.38 -0.42 -4.77 16 7 C 0.07 1.73 6.08 -82.10 -0.50 1.23 16 8 C 0.28 7.31 3.22 -70.01 -0.23 7.09 16 9 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 10 N -0.85 -21.55 9.18 -6.65 -0.06 -21.61 16 11 C -0.54 -15.33 8.70 -34.44 -0.30 -15.63 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 13 C 0.07 1.82 5.38 -17.82 -0.10 1.72 16 14 N -0.90 -25.07 11.54 55.43 0.64 -24.43 16 15 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 N -0.37 -8.62 12.05 33.43 0.40 -8.22 16 20 O 0.08 1.68 10.68 17.16 0.18 1.86 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 23 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.68 8.04 -51.93 -0.42 0.27 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.16 2.69 8.06 -52.49 -0.42 2.27 16 31 H 0.36 9.46 7.08 -39.29 -0.28 9.18 16 32 H 0.32 8.05 8.98 -39.29 -0.35 7.69 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -29.68 281.11 -5.40 -35.07 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.81 Total: 11.38 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.96 Total: -14.93 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.98 Total: -54.26 kcal Atomic # 8 Polarization: 1.68 SS G_CDS: 0.18 Total: 1.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.68 -5.40 -35.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.521 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds