Wall clock time and date at job start Mon Mar 30 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 C 1.52997 * 109.46883 * 240.00101 * 2 1 3 5 5 C 1.50699 * 109.47111 * 120.00461 * 2 1 3 6 6 C 1.35447 * 126.77919 * 59.99338 * 5 2 1 7 7 C 1.41385 * 103.98440 * 179.97438 * 6 5 2 8 8 C 1.50703 * 126.79986 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47058 * 4.99795 * 8 7 6 10 10 N 1.46902 * 109.46759 * 245.00074 * 8 7 6 11 11 C 1.50699 * 109.46836 * 125.00076 * 8 7 6 12 12 H 1.07994 * 120.00218 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99996 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99763 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47236 * 90.00387 * 15 13 11 17 17 H 1.48502 * 109.47105 * 210.00181 * 15 13 11 18 18 H 1.48502 * 109.47468 * 330.00054 * 15 13 11 19 19 N 1.30172 * 106.39687 * 0.02562 * 7 6 5 20 20 O 1.20924 * 111.60656 * 359.97438 * 19 7 6 21 21 H 1.09000 * 109.46873 * 299.99745 * 1 2 3 22 22 H 1.09008 * 109.47109 * 59.99679 * 1 2 3 23 23 H 1.09002 * 109.47472 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47274 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46785 * 300.00215 * 3 2 1 26 26 H 1.08995 * 109.46987 * 59.99803 * 3 2 1 27 27 H 1.09002 * 109.47362 * 299.99870 * 4 2 1 28 28 H 1.09004 * 109.47317 * 59.99750 * 4 2 1 29 29 H 1.09000 * 109.47474 * 179.97438 * 4 2 1 30 30 H 1.08001 * 128.00625 * 0.23336 * 6 5 2 31 31 H 1.00902 * 110.99659 * 176.04897 * 10 8 7 32 32 H 1.00895 * 111.00033 * 299.99926 * 10 8 7 33 33 H 0.96999 * 119.99703 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7105 1.2304 6 6 1.7912 -1.9968 1.5793 7 6 2.4844 -2.1551 2.8014 8 6 2.5578 -3.4034 3.6425 9 1 2.0590 -4.2215 3.1229 10 7 1.8944 -3.1650 4.9313 11 6 4.0014 -3.7649 3.8798 12 1 4.7871 -3.1519 3.4636 13 6 4.3191 -4.8778 4.6293 14 7 3.3622 -5.6240 5.1366 15 14 6.1084 -5.3256 4.9241 16 1 6.5873 -4.6614 6.1629 17 1 6.2323 -6.7980 5.0724 18 1 6.9283 -4.8736 3.7714 19 7 3.0458 -1.0087 3.0565 20 8 2.8063 -0.1942 2.1954 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1393 29 1 3.1300 -0.7209 -1.2496 30 1 1.2081 -2.7326 1.0453 31 1 1.8734 -4.0062 5.4882 32 1 2.3387 -2.4105 5.4326 33 1 3.5858 -6.4072 5.6635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:30 Heat of formation + Delta-G solvation = 16.621274 kcal Electronic energy + Delta-G solvation = -15549.411714 eV Core-core repulsion = 12997.760306 eV Total energy + Delta-G solvation = -2551.651408 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.72611 -38.14001 -37.25238 -34.48149 -32.66078 -31.47028 -28.40431 -28.12085 -28.03146 -25.25494 -23.98297 -22.46657 -19.76903 -18.72945 -18.27381 -17.92263 -16.85735 -16.07673 -15.84450 -14.98102 -14.91974 -14.85032 -14.39031 -14.22377 -13.36968 -13.15099 -13.09546 -12.98623 -12.89926 -12.54693 -12.33852 -12.13449 -11.96516 -11.94912 -11.87051 -11.65325 -10.88719 -10.76927 -10.11841 -9.35745 -8.23584 -6.47020 0.74407 1.32137 1.33043 1.43564 1.55648 2.31249 2.36306 2.96553 3.57332 3.61199 4.00233 4.02906 4.19139 4.37919 4.49768 4.63238 4.74169 4.81455 4.85899 4.91289 5.03110 5.03155 5.10900 5.20808 5.34150 5.43679 5.46480 5.47474 5.54979 5.93085 6.48372 6.74723 6.96500 7.27279 7.64982 8.73957 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044990 B = 0.006746 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.216372 B = 4149.725713 C = 4307.965817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.018 3.982 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.025 4.025 6 C -0.240 4.240 7 C 0.041 3.959 8 C 0.280 3.720 9 H 0.034 0.966 10 N -0.838 5.838 11 C -0.564 4.564 12 H 0.038 0.962 13 C 0.026 3.974 14 N -0.912 5.912 15 Si 0.963 3.037 16 H -0.275 1.275 17 H -0.272 1.272 18 H -0.277 1.277 19 N -0.398 5.398 20 O 0.087 5.913 21 H 0.051 0.949 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.178 0.822 31 H 0.351 0.649 32 H 0.316 0.684 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 10.117 -12.340 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.090 4.090 6 C -0.261 4.261 7 C -0.117 4.117 8 C 0.170 3.830 9 H 0.052 0.948 10 N -0.367 5.367 11 C -0.604 4.604 12 H 0.056 0.944 13 C -0.175 4.175 14 N -0.551 5.551 15 Si 0.788 3.212 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.202 1.202 19 N -0.104 5.104 20 O 0.023 5.977 21 H 0.071 0.929 22 H 0.116 0.884 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.195 0.805 31 H 0.167 0.833 32 H 0.124 0.876 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.764 10.565 -11.678 16.452 hybrid contribution 1.502 -1.427 0.578 2.151 sum -3.261 9.138 -11.099 14.742 Atomic orbital electron populations 1.21928 0.91011 1.02954 1.03487 1.19368 0.96844 0.95473 0.86641 1.21891 1.01318 0.93258 1.03596 1.21939 1.01096 1.00695 0.95791 1.25108 0.95706 0.93652 0.94491 1.22519 1.07417 0.98153 0.98047 1.24058 0.95663 0.95235 0.96784 1.17205 0.92262 0.86206 0.87359 0.94780 1.59398 1.57712 1.12115 1.07492 1.21912 0.93184 1.11164 1.34146 0.94405 1.25713 1.01975 0.95145 0.94695 1.69807 1.33450 1.16932 1.34906 0.85491 0.79674 0.77695 0.78359 1.20043 1.19639 1.20192 1.73735 1.22466 1.02141 1.12052 1.84740 1.52355 1.35646 1.24929 0.92940 0.88376 0.92285 0.92822 0.88675 0.92598 0.92290 0.88321 0.93173 0.80493 0.83347 0.87558 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.36 71.98 0.60 -1.85 16 2 C 0.02 0.39 0.94 -52.93 -0.05 0.34 16 3 C -0.14 -2.67 8.08 71.98 0.58 -2.09 16 4 C -0.14 -2.54 8.36 71.98 0.60 -1.94 16 5 C -0.03 -0.84 5.77 25.04 0.14 -0.69 16 6 C -0.24 -9.29 10.55 22.40 0.24 -9.06 16 7 C 0.04 1.99 6.08 43.58 0.26 2.26 16 8 C 0.28 15.21 3.22 43.42 0.14 15.35 16 9 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 10 N -0.84 -43.77 9.18 -174.95 -1.61 -45.37 16 11 C -0.56 -32.76 8.70 25.60 0.22 -32.54 16 12 H 0.04 2.29 7.74 -2.91 -0.02 2.26 16 13 C 0.03 1.43 5.38 84.66 0.46 1.88 16 14 N -0.91 -51.37 11.54 21.45 0.25 -51.12 16 15 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 N -0.40 -19.03 12.05 -49.55 -0.60 -19.62 16 20 O 0.09 3.50 10.68 71.56 0.76 4.27 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.06 1.11 8.03 -2.39 -0.02 1.09 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.14 8.04 -2.39 -0.02 1.12 16 28 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.18 5.96 8.06 -2.91 -0.02 5.93 16 31 H 0.35 18.99 7.08 -89.69 -0.63 18.36 16 32 H 0.32 16.49 8.98 -89.70 -0.81 15.69 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -64.82 281.11 3.70 -61.11 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.33 Total: 32.47 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.20 Total: -28.32 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -1.96 Total: -116.12 kcal Atomic # 8 Polarization: 3.50 SS G_CDS: 0.76 Total: 4.27 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.82 3.70 -61.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.734 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds