Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35283 * 117.00195 * 2 1 4 4 C 1.40247 * 126.52267 * 95.96181 * 3 2 1 5 5 C 1.41288 * 126.61935 * 359.69545 * 4 3 2 6 6 H 1.08003 * 119.99719 * 214.03372 * 5 4 3 7 7 C 1.39596 * 120.00202 * 34.03162 * 5 4 3 8 8 N 1.31156 * 119.99679 * 17.19007 * 7 5 4 9 9 Si 1.86796 * 120.00455 * 197.18754 * 7 5 4 10 10 H 1.48501 * 109.46892 * 60.00076 * 9 7 5 11 11 H 1.48501 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47021 * 300.00238 * 9 7 5 13 13 C 1.41845 * 106.76117 * 179.73564 * 4 3 2 14 14 C 1.50707 * 125.90790 * 179.97438 * 13 4 3 15 15 C 1.52992 * 109.46794 * 119.99786 * 14 13 4 16 16 C 1.52997 * 109.46944 * 239.99888 * 14 13 4 17 17 N 1.30273 * 108.18828 * 359.97438 * 13 4 3 18 18 N 1.34928 * 126.51902 * 275.64416 * 3 2 1 19 19 C 1.46502 * 125.68504 * 0.22774 * 18 3 2 20 20 H 1.09001 * 109.46904 * 64.50182 * 1 2 3 21 21 H 1.08993 * 109.47539 * 184.50132 * 1 2 3 22 22 H 1.09002 * 109.46991 * 304.50754 * 1 2 3 23 23 H 0.96996 * 120.00212 * 179.97438 * 8 7 5 24 24 H 1.09002 * 109.46635 * 359.97438 * 14 13 4 25 25 H 1.08996 * 109.47611 * 299.99744 * 15 14 13 26 26 H 1.09002 * 109.47745 * 60.00415 * 15 14 13 27 27 H 1.09004 * 109.47018 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.46989 * 60.00252 * 16 14 13 29 29 H 1.09001 * 109.46943 * 179.97438 * 16 14 13 30 30 H 1.09000 * 109.47366 * 300.00062 * 16 14 13 31 31 H 1.08997 * 109.47285 * 93.55893 * 19 18 3 32 32 H 1.09000 * 109.47530 * 213.55961 * 19 18 3 33 33 H 1.09003 * 109.47293 * 333.55554 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 6 2.5264 1.8959 1.1210 5 6 2.4602 1.4698 2.4664 6 1 2.3316 2.1947 3.2567 7 6 2.5609 0.1119 2.7744 8 7 3.0454 -0.7268 1.8901 9 14 2.0057 -0.5105 4.4458 10 1 0.5644 -0.2060 4.6335 11 1 2.2161 -1.9786 4.5222 12 1 2.7958 0.1583 5.5105 13 6 3.0937 3.1051 0.6433 14 6 3.7389 4.1731 1.4885 15 6 5.1951 4.3551 1.0559 16 6 2.9844 5.4917 1.3075 17 7 2.9605 3.1328 -0.6523 18 7 2.3127 1.9692 -1.0791 19 6 1.9830 1.6347 -2.4668 20 1 -0.3633 0.4424 -0.9276 21 1 -0.3634 -1.0244 0.0806 22 1 -0.3633 0.5822 0.8469 23 1 3.1158 -1.6702 2.1041 24 1 3.7052 3.8764 2.5368 25 1 5.7326 3.4157 1.1849 26 1 5.2284 4.6519 0.0076 27 1 5.6619 5.1273 1.6675 28 1 1.9470 5.3619 1.6157 29 1 3.4508 6.2640 1.9192 30 1 3.0176 5.7885 0.2592 31 1 1.0195 2.0729 -2.7271 32 1 2.7530 2.0308 -3.1289 33 1 1.9312 0.5515 -2.5770 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260144813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = 28.592692 kcal Electronic energy + Delta-G solvation = -16092.169269 eV Core-core repulsion = 13541.036980 eV Total energy + Delta-G solvation = -2551.132288 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57887 -36.53937 -34.61030 -33.15545 -31.06630 -28.50838 -26.73764 -26.45067 -25.35614 -23.94713 -21.35283 -19.74590 -17.96609 -16.97869 -15.69815 -14.90413 -14.85811 -14.29474 -13.66012 -13.55884 -13.45637 -13.00300 -12.65163 -12.39850 -11.96551 -11.66596 -11.48146 -11.13799 -11.06886 -10.85253 -10.55918 -10.41979 -10.31703 -10.19645 -10.04449 -9.36400 -8.78956 -8.46804 -7.64600 -6.82429 -6.27427 -3.86180 3.07387 3.25132 3.27632 3.30945 3.74376 4.16419 4.30281 5.09384 5.44610 5.55380 5.73023 5.74885 5.86841 5.95208 5.99819 6.05846 6.20320 6.23274 6.35242 6.37350 6.48081 6.50463 6.61310 6.92025 6.98766 7.29717 7.52659 7.57113 7.80738 7.97830 8.57343 9.00105 9.20891 9.36905 9.40115 10.75622 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.013533 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.045624 B = 2068.474893 C = 3008.355402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.261 6.261 3 C 0.123 3.877 4 C 0.004 3.996 5 C -0.463 4.463 6 H 0.070 0.930 7 C 0.082 3.918 8 N -0.795 5.795 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.028 3.972 14 C 0.000 4.000 15 C -0.135 4.135 16 C -0.137 4.137 17 N -0.305 5.305 18 N -0.399 5.399 19 C 0.118 3.882 20 H 0.020 0.980 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.269 0.731 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 3.887 -2.538 5.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.169 6.169 3 C -0.039 4.039 4 C -0.007 4.007 5 C -0.497 4.497 6 H 0.088 0.912 7 C -0.133 4.133 8 N -0.422 5.422 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.196 1.196 13 C -0.137 4.137 14 C -0.021 4.021 15 C -0.193 4.193 16 C -0.195 4.195 17 N -0.132 5.132 18 N -0.196 5.196 19 C -0.025 4.025 20 H 0.039 0.961 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.824 3.951 -3.695 5.708 hybrid contribution -0.767 -1.014 1.272 1.798 sum -2.591 2.937 -2.423 4.605 Atomic orbital electron populations 1.22893 0.83991 1.01056 0.98845 1.86237 1.16113 1.21981 1.92588 1.19104 1.08540 0.89750 0.86528 1.17556 0.99296 0.91063 0.92762 1.18310 1.48574 0.91946 0.90853 0.91173 1.25497 0.93630 0.96927 0.97275 1.69907 1.33787 1.03788 1.34761 0.86695 0.79975 0.77727 0.84000 1.19676 1.20997 1.19641 1.22052 1.02207 0.98504 0.90986 1.19297 0.93312 0.91152 0.98329 1.21740 0.95878 1.00936 1.00732 1.21784 1.00043 0.96402 1.01233 1.76333 1.20019 1.02983 1.13867 1.47909 1.50980 1.15563 1.05169 1.21336 0.99785 1.00608 0.80778 0.96108 0.90723 0.94082 0.92052 0.89614 0.92720 0.92951 0.93487 0.93106 0.93405 0.92871 0.93345 0.91290 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.13 101.05 1.12 1.71 16 2 O -0.26 -6.64 8.32 -17.54 -0.15 -6.79 16 3 C 0.12 3.26 6.50 -15.44 -0.10 3.16 16 4 C 0.00 0.10 5.58 -106.60 -0.59 -0.50 16 5 C -0.46 -12.73 8.78 -37.92 -0.33 -13.06 16 6 H 0.07 1.85 7.62 -52.48 -0.40 1.45 16 7 C 0.08 2.20 5.09 -17.33 -0.09 2.11 16 8 N -0.80 -22.33 11.20 55.53 0.62 -21.71 16 9 Si 0.89 20.07 29.59 -169.99 -5.03 15.04 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.03 0.69 5.78 -81.87 -0.47 0.21 16 14 C 0.00 -0.01 3.30 -91.77 -0.30 -0.31 16 15 C -0.13 -2.43 9.17 37.15 0.34 -2.09 16 16 C -0.14 -2.35 9.18 37.16 0.34 -2.01 16 17 N -0.31 -7.42 12.45 33.98 0.42 -7.00 16 18 N -0.40 -9.56 3.99 -67.26 -0.27 -9.83 16 19 C 0.12 2.16 11.41 59.85 0.68 2.84 16 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.27 7.10 8.30 -40.82 -0.34 6.76 16 24 H 0.09 1.77 7.35 -51.93 -0.38 1.39 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 LS Contribution 283.66 15.07 4.27 4.27 Total: -1.00 -31.16 283.66 -4.51 -35.68 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.98 Total: -1.74 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.60 Total: -7.93 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.78 Total: -38.53 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.15 Total: -6.79 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.16 -4.51 -35.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.269 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds