Wall clock time and date at job start Mon Mar 30 2020 02:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35283 * 117.00195 * 2 1 4 4 C 1.40247 * 126.52267 * 95.96181 * 3 2 1 5 5 C 1.41288 * 126.61935 * 359.69545 * 4 3 2 6 6 H 1.08003 * 119.99719 * 214.03372 * 5 4 3 7 7 C 1.39596 * 120.00202 * 34.03162 * 5 4 3 8 8 N 1.31156 * 119.99679 * 17.19007 * 7 5 4 9 9 Si 1.86796 * 120.00455 * 197.18754 * 7 5 4 10 10 H 1.48501 * 109.46892 * 60.00076 * 9 7 5 11 11 H 1.48501 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47021 * 300.00238 * 9 7 5 13 13 C 1.41845 * 106.76117 * 179.73564 * 4 3 2 14 14 C 1.50707 * 125.90790 * 179.97438 * 13 4 3 15 15 C 1.52992 * 109.46794 * 119.99786 * 14 13 4 16 16 C 1.52997 * 109.46944 * 239.99888 * 14 13 4 17 17 N 1.30273 * 108.18828 * 359.97438 * 13 4 3 18 18 N 1.34928 * 126.51902 * 275.64416 * 3 2 1 19 19 C 1.46502 * 125.68504 * 0.22774 * 18 3 2 20 20 H 1.09001 * 109.46904 * 64.50182 * 1 2 3 21 21 H 1.08993 * 109.47539 * 184.50132 * 1 2 3 22 22 H 1.09002 * 109.46991 * 304.50754 * 1 2 3 23 23 H 0.96996 * 120.00212 * 179.97438 * 8 7 5 24 24 H 1.09002 * 109.46635 * 359.97438 * 14 13 4 25 25 H 1.08996 * 109.47611 * 299.99744 * 15 14 13 26 26 H 1.09002 * 109.47745 * 60.00415 * 15 14 13 27 27 H 1.09004 * 109.47018 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.46989 * 60.00252 * 16 14 13 29 29 H 1.09001 * 109.46943 * 179.97438 * 16 14 13 30 30 H 1.09000 * 109.47366 * 300.00062 * 16 14 13 31 31 H 1.08997 * 109.47285 * 93.55893 * 19 18 3 32 32 H 1.09000 * 109.47530 * 213.55961 * 19 18 3 33 33 H 1.09003 * 109.47293 * 333.55554 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 6 2.5264 1.8959 1.1210 5 6 2.4602 1.4698 2.4664 6 1 2.3316 2.1947 3.2567 7 6 2.5609 0.1119 2.7744 8 7 3.0454 -0.7268 1.8901 9 14 2.0057 -0.5105 4.4458 10 1 0.5644 -0.2060 4.6335 11 1 2.2161 -1.9786 4.5222 12 1 2.7958 0.1583 5.5105 13 6 3.0937 3.1051 0.6433 14 6 3.7389 4.1731 1.4885 15 6 5.1951 4.3551 1.0559 16 6 2.9844 5.4917 1.3075 17 7 2.9605 3.1328 -0.6523 18 7 2.3127 1.9692 -1.0791 19 6 1.9830 1.6347 -2.4668 20 1 -0.3633 0.4424 -0.9276 21 1 -0.3634 -1.0244 0.0806 22 1 -0.3633 0.5822 0.8469 23 1 3.1158 -1.6702 2.1041 24 1 3.7052 3.8764 2.5368 25 1 5.7326 3.4157 1.1849 26 1 5.2284 4.6519 0.0076 27 1 5.6619 5.1273 1.6675 28 1 1.9470 5.3619 1.6157 29 1 3.4508 6.2640 1.9192 30 1 3.0176 5.7885 0.2592 31 1 1.0195 2.0729 -2.7271 32 1 2.7530 2.0308 -3.1289 33 1 1.9312 0.5515 -2.5770 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:51 Heat of formation + Delta-G solvation = 8.234401 kcal Electronic energy + Delta-G solvation = -16093.052070 eV Core-core repulsion = 13541.036980 eV Total energy + Delta-G solvation = -2552.015090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.43886 -38.38518 -36.24142 -35.08782 -32.76277 -30.43129 -28.47781 -27.85435 -27.04355 -25.83692 -22.98243 -21.65763 -19.75685 -18.88364 -17.54085 -16.75275 -16.64792 -16.06476 -15.29438 -15.21481 -15.12005 -14.63314 -14.18045 -14.11637 -13.54233 -13.27341 -13.02670 -12.85752 -12.74134 -12.50302 -12.33661 -12.12023 -11.93197 -11.86204 -11.69455 -11.21426 -10.72841 -10.34532 -9.45680 -8.80204 -8.25156 -5.90155 1.22101 1.44391 1.46939 1.54080 2.00631 2.26316 2.42671 3.28293 3.50267 3.97677 4.20240 4.30018 4.39447 4.46112 4.50316 4.59503 4.64023 4.72215 4.80622 4.92820 4.94050 5.08103 5.19590 5.34898 5.42684 5.53890 5.59618 5.76849 5.92209 6.18018 6.54603 7.06128 7.22554 7.43816 7.48213 8.79002 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.013533 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.045624 B = 2068.474893 C = 3008.355402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.286 6.286 3 C 0.122 3.878 4 C -0.049 4.049 5 C -0.488 4.488 6 H 0.067 0.933 7 C 0.041 3.959 8 N -0.834 5.834 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.264 1.264 13 C 0.023 3.977 14 C -0.006 4.006 15 C -0.126 4.126 16 C -0.126 4.126 17 N -0.312 5.312 18 N -0.405 5.405 19 C 0.110 3.890 20 H 0.045 0.955 21 H 0.101 0.899 22 H 0.026 0.974 23 H 0.270 0.730 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 4.562 -2.593 5.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.194 6.194 3 C -0.041 4.041 4 C -0.059 4.059 5 C -0.522 4.522 6 H 0.085 0.915 7 C -0.171 4.171 8 N -0.463 5.463 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.189 1.189 13 C -0.143 4.143 14 C -0.027 4.027 15 C -0.184 4.184 16 C -0.184 4.184 17 N -0.139 5.139 18 N -0.203 5.203 19 C -0.032 4.032 20 H 0.063 0.937 21 H 0.120 0.880 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.270 4.644 -3.776 6.401 hybrid contribution -0.669 -1.211 1.156 1.803 sum -2.939 3.432 -2.620 5.223 Atomic orbital electron populations 1.23050 0.81293 1.02857 0.99494 1.86129 1.18608 1.21859 1.92814 1.19356 1.07970 0.89441 0.87365 1.18044 1.01320 0.93027 0.93551 1.18508 1.49813 0.92637 0.91226 0.91514 1.26210 0.93254 0.96757 1.00852 1.70010 1.35417 1.03929 1.36925 0.85642 0.79526 0.77176 0.79554 1.19245 1.20506 1.18855 1.22632 1.01645 0.98667 0.91335 1.19468 0.94763 0.91509 0.96959 1.21666 0.94325 1.01009 1.01378 1.21689 0.99339 0.95504 1.01823 1.76282 1.20385 1.03479 1.13768 1.48314 1.50308 1.15006 1.06651 1.21687 1.01722 1.01436 0.78307 0.93677 0.88036 0.95476 0.92073 0.90725 0.94900 0.93015 0.89816 0.94078 0.89924 0.93004 0.90807 0.89414 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 11.13 113.37 1.26 2.41 16 2 O -0.29 -14.51 8.32 -85.68 -0.71 -15.23 16 3 C 0.12 6.51 6.50 84.71 0.55 7.06 16 4 C -0.05 -2.73 5.58 -21.15 -0.12 -2.85 16 5 C -0.49 -27.45 8.78 23.35 0.20 -27.24 16 6 H 0.07 3.63 7.62 -2.91 -0.02 3.61 16 7 C 0.04 2.22 5.09 85.12 0.43 2.65 16 8 N -0.83 -47.70 11.20 21.78 0.24 -47.45 16 9 Si 0.96 41.61 29.59 68.60 2.03 43.64 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 C 0.02 1.12 5.78 43.68 0.25 1.37 16 14 C -0.01 -0.26 3.30 -11.54 -0.04 -0.30 16 15 C -0.13 -4.38 9.17 71.98 0.66 -3.72 16 16 C -0.13 -4.10 9.18 71.98 0.66 -3.44 16 17 N -0.31 -15.07 12.45 -46.40 -0.58 -15.65 16 18 N -0.41 -19.20 3.99 -478.39 -1.91 -21.12 16 19 C 0.11 3.81 11.41 127.77 1.46 5.26 16 20 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.27 14.47 8.30 -92.71 -0.77 13.70 16 24 H 0.07 3.10 7.35 -2.39 -0.02 3.08 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.08 2.63 8.05 -2.39 -0.02 2.61 16 Total: -1.00 -67.86 283.66 5.48 -62.39 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.08 Total: 12.20 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 5.32 Total: -18.79 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.24 Total: -84.22 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.71 Total: -15.23 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -67.86 5.48 -62.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.622 kcal (2) G-P(sol) polarization free energy of solvation -67.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds