Wall clock time and date at job start Mon Mar 30 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 N 1.46504 * 109.46870 * 120.00063 * 2 1 3 5 5 C 1.38160 * 119.99890 * 120.11808 * 4 2 1 6 6 N 1.31052 * 125.71108 * 359.97438 * 5 4 2 7 7 C 1.34729 * 108.60504 * 179.97438 * 6 5 4 8 8 C 1.34092 * 107.79147 * 359.97438 * 7 6 5 9 9 O 1.34207 * 125.71415 * 179.69262 * 5 4 2 10 10 C 1.46503 * 120.00003 * 300.11679 * 4 2 1 11 11 H 1.09003 * 109.46971 * 1.45139 * 10 4 2 12 12 C 1.52994 * 109.47005 * 241.44918 * 10 4 2 13 13 C 1.50695 * 109.46780 * 121.44996 * 10 4 2 14 14 H 1.07998 * 120.00333 * 5.00858 * 13 10 4 15 15 C 1.37879 * 119.99658 * 185.28021 * 13 10 4 16 16 N 1.31514 * 120.00080 * 359.72699 * 15 13 10 17 17 Si 1.86806 * 120.00050 * 179.72265 * 15 13 10 18 18 H 1.48501 * 109.47084 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46777 * 120.00386 * 17 15 13 20 20 H 1.48497 * 109.47222 * 240.00125 * 17 15 13 21 21 H 1.09009 * 109.46957 * 305.69822 * 1 2 3 22 22 H 1.09004 * 109.46887 * 65.68799 * 1 2 3 23 23 H 1.08992 * 109.47618 * 185.69284 * 1 2 3 24 24 H 1.08995 * 109.47115 * 239.99837 * 2 1 3 25 25 H 1.08998 * 109.46721 * 182.01207 * 3 2 1 26 26 H 1.08998 * 109.47022 * 302.01639 * 3 2 1 27 27 H 1.09002 * 109.47058 * 62.01562 * 3 2 1 28 28 H 1.07991 * 126.10445 * 179.97438 * 7 6 5 29 29 H 1.07997 * 126.35879 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.47433 * 179.71512 * 12 10 4 31 31 H 1.09000 * 109.47608 * 299.71915 * 12 10 4 32 32 H 1.09011 * 109.47104 * 59.71944 * 12 10 4 33 33 H 0.97003 * 120.00098 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8146 -1.8126 1.0694 6 7 3.1997 -2.3536 -0.0604 7 6 3.9631 -3.4288 0.2161 8 6 4.0434 -3.5422 1.5498 9 8 3.3277 -2.5276 2.0826 10 6 1.6622 -0.1916 2.5268 11 1 1.0132 0.6784 2.4269 12 6 2.9337 0.2044 3.2800 13 6 0.9410 -1.2713 3.2917 14 1 0.8364 -2.2577 2.8646 15 6 0.4097 -0.9982 4.5343 16 7 0.5371 0.2031 5.0544 17 14 -0.4911 -2.3343 5.4792 18 1 -0.4962 -3.5870 4.6817 19 1 0.1965 -2.5747 6.7734 20 1 -1.8892 -1.9035 5.7341 21 1 -0.3633 0.5997 0.8346 22 1 -0.3633 0.4231 -0.9366 23 1 -0.3634 -1.0225 0.1019 24 1 1.8933 -0.5138 -0.8899 25 1 3.1294 1.4426 -0.0361 26 1 1.6475 1.9666 -0.8713 27 1 1.7065 1.9458 0.9075 28 1 4.4274 -4.0825 -0.5073 29 1 4.5823 -4.3019 2.0964 30 1 2.6685 0.5805 4.2681 31 1 3.5805 -0.6666 3.3843 32 1 3.4580 0.9819 2.7241 33 1 0.1630 0.3953 5.9285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:43 Heat of formation + Delta-G solvation = 11.282326 kcal Electronic energy + Delta-G solvation = -16268.293006 eV Core-core repulsion = 13716.410084 eV Total energy + Delta-G solvation = -2551.882922 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.72412 -39.07358 -35.67625 -34.92898 -33.25418 -31.28460 -28.75578 -28.07521 -27.17929 -23.87844 -23.42231 -22.38582 -20.47648 -19.18081 -17.77501 -17.23066 -16.89062 -16.80618 -16.00007 -15.02522 -14.90759 -14.65060 -14.28884 -13.71187 -13.52924 -13.27426 -13.21830 -12.87934 -12.83926 -12.47069 -12.44885 -12.19658 -12.13195 -11.98223 -11.70496 -11.25591 -11.02327 -10.59579 -10.50890 -8.38217 -8.08884 -6.29094 1.05904 1.35578 1.38725 1.48287 1.56701 2.14391 2.38747 2.86152 3.12388 3.91427 4.12390 4.26465 4.37395 4.45996 4.58944 4.76463 4.80552 4.82093 4.92706 4.97756 5.04856 5.10663 5.30040 5.36185 5.37711 5.43449 5.53890 5.68160 5.75105 6.11399 6.23617 6.67287 6.80371 7.29668 7.43951 8.87195 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.012305 C = 0.009613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.168584 B = 2275.005505 C = 2911.897443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 C -0.152 4.152 4 N -0.562 5.562 5 C 0.464 3.536 6 N -0.589 5.589 7 C -0.023 4.023 8 C -0.148 4.148 9 O -0.233 6.233 10 C 0.285 3.715 11 H 0.048 0.952 12 C -0.138 4.138 13 C -0.527 4.527 14 H 0.037 0.963 15 C 0.027 3.973 16 N -0.911 5.911 17 Si 0.950 3.050 18 H -0.280 1.280 19 H -0.278 1.278 20 H -0.275 1.275 21 H 0.048 0.952 22 H 0.094 0.906 23 H 0.037 0.963 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.210 0.790 29 H 0.238 0.762 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -1.642 -7.807 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 C -0.210 4.210 4 N -0.289 5.289 5 C 0.167 3.833 6 N -0.332 5.332 7 C -0.160 4.160 8 C -0.219 4.219 9 O -0.121 6.121 10 C 0.183 3.817 11 H 0.066 0.934 12 C -0.197 4.197 13 C -0.566 4.566 14 H 0.055 0.945 15 C -0.173 4.173 16 N -0.550 5.550 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.204 1.204 20 H -0.200 1.200 21 H 0.067 0.933 22 H 0.113 0.887 23 H 0.057 0.943 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.226 0.774 29 H 0.254 0.746 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.235 -1.184 -8.142 8.841 hybrid contribution -0.229 -1.066 1.608 1.943 sum 3.006 -2.251 -6.534 7.536 Atomic orbital electron populations 1.22085 0.94462 1.01419 1.02759 1.21173 0.94464 0.93242 0.86050 1.22136 1.00980 0.94789 1.03074 1.46495 1.50286 1.23367 1.08721 1.22055 0.91562 0.89086 0.80584 1.70777 1.23489 1.14526 1.24417 1.23511 1.00210 0.96762 0.95529 1.25219 1.05472 0.95797 0.95417 1.84654 1.54259 1.35492 1.37649 1.18544 0.92329 0.94054 0.76769 0.93446 1.21995 0.97745 0.98276 1.01653 1.21477 1.35532 0.96934 1.02689 0.94484 1.25462 0.96645 0.97382 0.97837 1.69970 1.46084 1.20878 1.18052 0.85632 0.78674 0.79538 0.78528 1.20491 1.20369 1.20010 0.93281 0.88698 0.94338 0.88817 0.93155 0.88488 0.93165 0.77369 0.74625 0.91617 0.95392 0.95127 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.09 71.98 0.65 -4.32 16 2 C 0.15 5.44 3.26 44.99 0.15 5.59 16 3 C -0.15 -4.58 9.22 71.98 0.66 -3.92 16 4 N -0.56 -24.81 2.38 -777.53 -1.85 -26.66 16 5 C 0.46 20.93 7.46 179.08 1.34 22.27 16 6 N -0.59 -24.17 10.34 -313.91 -3.25 -27.42 16 7 C -0.02 -0.78 11.88 83.30 0.99 0.21 16 8 C -0.15 -5.12 12.17 66.87 0.81 -4.31 16 9 O -0.23 -10.62 8.15 -9.70 -0.08 -10.70 16 10 C 0.28 14.05 1.69 44.24 0.07 14.12 16 11 H 0.05 2.46 6.10 -2.39 -0.01 2.44 16 12 C -0.14 -6.71 8.99 71.98 0.65 -6.06 16 13 C -0.53 -28.93 7.76 25.60 0.20 -28.73 16 14 H 0.04 2.16 7.32 -2.91 -0.02 2.14 16 15 C 0.03 1.46 5.33 84.66 0.45 1.91 16 16 N -0.91 -50.30 11.71 21.45 0.25 -50.05 16 17 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H 0.05 1.78 7.20 -2.38 -0.02 1.77 16 22 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.09 3.30 7.15 -2.39 -0.02 3.28 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.65 7.03 -2.39 -0.02 1.64 16 28 H 0.21 4.97 8.06 -2.92 -0.02 4.94 16 29 H 0.24 5.77 8.06 -2.91 -0.02 5.75 16 30 H 0.07 3.44 6.50 -2.39 -0.02 3.43 16 31 H 0.03 1.37 6.44 -2.39 -0.02 1.36 16 32 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -63.42 273.14 4.17 -59.25 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.09 Total: 12.97 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.98 Total: -3.25 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -4.84 Total: -104.13 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.08 Total: -10.70 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -63.42 4.17 -59.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.537 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds