Wall clock time and date at job start Mon Mar 30 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47307 * 2 1 4 4 N 1.46501 * 109.47705 * 120.00189 * 2 1 3 5 5 C 1.38159 * 120.00384 * 123.42018 * 4 2 1 6 6 N 1.31046 * 125.71157 * 179.97438 * 5 4 2 7 7 C 1.34726 * 108.60221 * 180.02562 * 6 5 4 8 8 C 1.34093 * 107.79446 * 359.97438 * 7 6 5 9 9 O 1.34210 * 125.70809 * 0.02562 * 5 4 2 10 10 C 1.46502 * 119.99807 * 303.42939 * 4 2 1 11 11 H 1.09004 * 109.47225 * 357.57848 * 10 4 2 12 12 C 1.53001 * 109.47506 * 117.58294 * 10 4 2 13 13 C 1.50696 * 109.47082 * 237.58623 * 10 4 2 14 14 H 1.08005 * 119.99934 * 354.63027 * 13 10 4 15 15 C 1.37882 * 120.00592 * 174.63085 * 13 10 4 16 16 N 1.31511 * 120.00441 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99311 * 359.97438 * 15 13 10 18 18 H 1.48506 * 109.46975 * 90.00142 * 17 15 13 19 19 H 1.48507 * 109.46864 * 209.99627 * 17 15 13 20 20 H 1.48494 * 109.47531 * 329.99821 * 17 15 13 21 21 H 1.09008 * 109.46652 * 305.86080 * 1 2 3 22 22 H 1.08996 * 109.47098 * 65.86269 * 1 2 3 23 23 H 1.08998 * 109.47251 * 185.86836 * 1 2 3 24 24 H 1.09002 * 109.47486 * 240.00127 * 2 1 3 25 25 H 1.08999 * 109.47007 * 183.98209 * 3 2 1 26 26 H 1.09001 * 109.46806 * 303.98448 * 3 2 1 27 27 H 1.09002 * 109.46603 * 63.98332 * 3 2 1 28 28 H 1.08004 * 126.10569 * 180.02562 * 7 6 5 29 29 H 1.07997 * 126.35901 * 180.02562 * 8 7 6 30 30 H 1.08990 * 109.46644 * 57.13504 * 12 10 4 31 31 H 1.09002 * 109.46938 * 177.13699 * 12 10 4 32 32 H 1.08997 * 109.47028 * 297.13220 * 12 10 4 33 33 H 0.96995 * 120.00083 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.8701 -1.7713 1.0706 6 7 3.3729 -2.4679 2.0601 7 6 4.1554 -3.4381 1.5486 8 6 4.1256 -3.3268 0.2126 9 8 3.3216 -2.2826 -0.0852 10 6 1.6037 -0.2355 2.5254 11 1 0.9719 0.6473 2.4265 12 6 0.8197 -1.3482 3.2240 13 6 2.8229 0.1086 3.3416 14 1 3.8094 -0.0823 2.9455 15 6 2.6792 0.6669 4.5941 16 7 3.7431 0.9667 5.3065 17 14 0.9730 0.9976 5.2789 18 1 0.5009 -0.1943 6.0285 19 1 1.0242 2.1680 6.1915 20 1 0.0375 1.2819 4.1612 21 1 -0.3633 0.6021 0.8329 22 1 -0.3633 0.4202 -0.9378 23 1 -0.3634 -1.0223 0.1051 24 1 1.8934 -0.5138 -0.8900 25 1 3.1277 1.4433 -0.0714 26 1 1.6196 1.9766 -0.8521 27 1 1.7362 1.9353 0.9236 28 1 4.7074 -4.1746 2.1137 29 1 4.6478 -3.9548 -0.4939 30 1 1.4340 -2.2469 3.2774 31 1 0.5549 -1.0285 4.2319 32 1 -0.0885 -1.5617 2.6603 33 1 3.6420 1.3591 6.1878 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:44 Heat of formation + Delta-G solvation = 21.484566 kcal Electronic energy + Delta-G solvation = -16297.556651 eV Core-core repulsion = 13746.116132 eV Total energy + Delta-G solvation = -2551.440520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.78408 -39.20657 -35.66306 -34.93164 -33.40398 -31.74419 -28.95277 -28.09580 -26.99637 -24.07210 -23.28006 -22.40416 -20.56469 -19.31112 -18.03534 -17.41901 -16.93156 -16.74218 -15.89585 -15.18188 -14.85180 -14.71335 -14.56306 -13.98488 -13.83990 -13.61388 -13.33343 -12.94345 -12.82504 -12.55635 -12.25922 -12.20508 -11.90276 -11.71999 -11.53548 -11.25959 -10.80221 -10.70918 -10.55095 -8.30605 -8.20509 -6.21968 0.98397 1.32736 1.37184 1.40542 1.47158 2.24082 2.36164 2.75858 3.13845 3.80483 4.14840 4.19687 4.28662 4.39449 4.50454 4.63444 4.68499 4.77638 4.80453 4.87551 4.97275 4.97977 5.07873 5.21068 5.34356 5.41039 5.51574 5.58376 5.62983 6.03210 6.49206 6.55418 6.81829 7.36136 7.45369 8.97696 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.012455 C = 0.009900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.332602 B = 2247.465302 C = 2827.473681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 C -0.156 4.156 4 N -0.558 5.558 5 C 0.453 3.547 6 N -0.561 5.561 7 C -0.042 4.042 8 C -0.126 4.126 9 O -0.245 6.245 10 C 0.271 3.729 11 H 0.065 0.935 12 C -0.163 4.163 13 C -0.494 4.494 14 H 0.027 0.973 15 C 0.010 3.990 16 N -0.953 5.953 17 Si 0.939 3.061 18 H -0.271 1.271 19 H -0.295 1.295 20 H -0.232 1.232 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.193 0.807 29 H 0.254 0.746 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 -4.139 -12.673 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 C -0.214 4.214 4 N -0.286 5.286 5 C 0.155 3.845 6 N -0.300 5.300 7 C -0.179 4.179 8 C -0.197 4.197 9 O -0.134 6.134 10 C 0.170 3.830 11 H 0.083 0.917 12 C -0.221 4.221 13 C -0.533 4.533 14 H 0.045 0.955 15 C -0.186 4.186 16 N -0.595 5.595 17 Si 0.764 3.236 18 H -0.197 1.197 19 H -0.222 1.222 20 H -0.155 1.155 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.210 0.790 29 H 0.270 0.730 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.228 -3.840 -11.958 14.490 hybrid contribution 0.359 -0.074 0.335 0.496 sum -6.869 -3.914 -11.623 14.057 Atomic orbital electron populations 1.22167 0.92768 1.02474 1.03789 1.21307 0.95904 0.93297 0.85919 1.22152 1.00500 0.95698 1.03033 1.46135 1.46865 1.27449 1.08103 1.21992 0.92384 0.91244 0.78847 1.71164 1.18293 1.10724 1.29801 1.23664 1.01146 0.99479 0.93656 1.25143 1.02152 0.93979 0.98380 1.84343 1.53400 1.40983 1.34665 1.18892 0.93327 0.92792 0.77985 0.91716 1.22426 0.99262 1.01225 0.99211 1.21297 0.92699 1.38318 1.00974 0.95472 1.25728 1.00590 0.95397 0.96902 1.70061 1.31393 1.45642 1.12380 0.85995 0.80770 0.77198 0.79595 1.19735 1.22242 1.15535 0.92410 0.88283 0.92591 0.89232 0.94568 0.88307 0.93125 0.78981 0.73041 0.92522 0.93861 0.92482 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.03 71.98 0.65 -3.14 16 2 C 0.14 4.33 3.27 44.99 0.15 4.48 16 3 C -0.16 -4.72 9.29 71.98 0.67 -4.05 16 4 N -0.56 -23.22 2.38 -777.51 -1.85 -25.07 16 5 C 0.45 19.91 7.52 179.08 1.35 21.26 16 6 N -0.56 -26.63 8.34 -313.90 -2.62 -29.25 16 7 C -0.04 -1.56 11.88 83.30 0.99 -0.57 16 8 C -0.13 -3.91 12.17 66.87 0.81 -3.09 16 9 O -0.25 -9.20 9.93 -9.73 -0.10 -9.29 16 10 C 0.27 12.58 1.35 44.24 0.06 12.64 16 11 H 0.07 2.85 4.78 -2.38 -0.01 2.83 16 12 C -0.16 -7.17 8.80 71.98 0.63 -6.53 16 13 C -0.49 -28.66 8.27 25.60 0.21 -28.45 16 14 H 0.03 1.84 7.41 -2.91 -0.02 1.82 16 15 C 0.01 0.59 5.45 84.66 0.46 1.05 16 16 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 17 Si 0.94 44.05 24.67 68.60 1.69 45.74 16 18 H -0.27 -12.44 6.86 99.48 0.68 -11.76 16 19 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 20 H -0.23 -9.50 6.39 99.48 0.64 -8.87 16 21 H 0.06 1.50 7.12 -2.38 -0.02 1.48 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 24 H 0.09 2.60 7.23 -2.39 -0.02 2.59 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 1.72 7.08 -2.39 -0.02 1.71 16 28 H 0.19 5.82 8.06 -2.91 -0.02 5.79 16 29 H 0.25 4.74 8.06 -2.91 -0.02 4.71 16 30 H 0.06 2.72 6.37 -2.39 -0.02 2.70 16 31 H 0.04 1.93 3.98 -2.39 -0.01 1.92 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -74.31 265.79 4.41 -69.90 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.00 Total: 15.38 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.98 Total: -6.41 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -4.17 Total: -115.31 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.10 Total: -9.29 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.69 Total: 45.74 kcal Total: -74.31 4.41 -69.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.385 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds