Wall clock time and date at job start Mon Mar 30 2020 02:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34483 * 126.16242 * 2 1 4 4 C 1.30261 * 108.69839 * 179.97438 * 3 2 1 5 5 O 1.33974 * 108.75966 * 359.72784 * 4 3 2 6 6 C 1.34323 * 126.16690 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.44300 * 0.02562 * 6 2 1 8 8 C 1.52999 * 109.47150 * 299.98908 * 7 6 2 9 9 C 1.50697 * 109.47576 * 59.99005 * 7 6 2 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00428 * 180.02562 * 9 7 6 12 12 N 1.31510 * 119.99600 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 120.00227 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46821 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46996 * 120.00312 * 13 11 9 16 16 H 1.48495 * 109.46665 * 239.99993 * 13 11 9 17 17 N 1.46906 * 109.47167 * 179.97438 * 7 6 2 18 18 C 1.46898 * 110.99888 * 299.99784 * 17 7 6 19 19 C 1.46902 * 110.99573 * 63.95150 * 17 7 6 20 20 H 1.09001 * 109.47279 * 270.00591 * 1 2 3 21 21 H 1.08996 * 109.46722 * 30.00725 * 1 2 3 22 22 H 1.09000 * 109.46939 * 150.00747 * 1 2 3 23 23 H 1.07992 * 125.61771 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47362 * 300.00765 * 8 7 6 25 25 H 1.09002 * 109.46716 * 60.00124 * 8 7 6 26 26 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 27 27 H 0.97006 * 120.00212 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.47334 * 60.00212 * 18 17 7 29 29 H 1.09000 * 109.46674 * 180.02562 * 18 17 7 30 30 H 1.08995 * 109.47296 * 299.99911 * 18 17 7 31 31 H 1.09004 * 109.47457 * 60.00221 * 19 17 7 32 32 H 1.09001 * 109.46615 * 179.97438 * 19 17 7 33 33 H 1.08990 * 109.47358 * 299.99539 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5432 0.6948 0.0006 5 8 3.5735 -0.6446 0.0069 6 6 2.2997 -1.0844 0.0005 7 6 1.8493 -2.5225 0.0006 8 6 1.0084 -2.7935 1.2497 9 6 1.0215 -2.7898 -1.2299 10 1 0.8400 -1.9976 -1.9412 11 6 0.4958 -4.0456 -1.4478 12 7 0.7163 -5.0101 -0.5814 13 14 -0.5298 -4.3771 -2.9735 14 1 -0.6284 -3.1360 -3.7829 15 1 0.1144 -5.4442 -3.7807 16 1 -1.8902 -4.8149 -2.5699 17 7 3.0247 -3.4038 0.0006 18 6 3.8571 -3.1710 -1.1872 19 6 3.8072 -3.2376 1.2327 20 1 -0.3634 0.0001 1.0277 21 1 -0.3632 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5137 23 1 4.4066 1.3435 0.0011 24 1 1.6071 -2.6001 2.1398 25 1 0.1363 -2.1396 1.2494 26 1 0.6830 -3.8338 1.2501 27 1 0.3462 -5.8936 -0.7344 28 1 4.1969 -2.1354 -1.1956 29 1 4.7199 -3.8366 -1.1622 30 1 3.2721 -3.3687 -2.0853 31 1 3.1858 -3.4838 2.0938 32 1 4.6711 -3.9018 1.2067 33 1 4.1451 -2.2044 1.3119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260195431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:49 Heat of formation + Delta-G solvation = 38.258981 kcal Electronic energy + Delta-G solvation = -16727.647078 eV Core-core repulsion = 14176.933951 eV Total energy + Delta-G solvation = -2550.713127 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.57710 -37.16465 -34.49815 -32.54542 -31.22058 -28.83453 -27.16595 -26.35174 -24.69127 -22.95620 -21.91123 -20.68728 -19.03481 -16.76532 -16.01519 -15.70178 -14.95552 -14.53991 -13.63580 -13.55590 -13.46404 -12.72868 -12.58407 -12.12842 -11.75871 -11.53418 -11.35291 -11.03442 -10.92929 -10.80689 -10.64079 -10.40381 -10.20892 -10.19122 -10.07715 -9.66552 -9.18765 -8.50946 -7.65093 -7.00246 -6.02339 -4.18756 2.36067 3.24757 3.34374 3.36809 3.46230 3.60142 4.36811 4.85038 5.06598 5.49482 5.78396 5.81198 6.14382 6.24594 6.32171 6.37690 6.40973 6.52104 6.59944 6.63167 6.76828 6.77172 6.83737 7.01446 7.04573 7.17345 7.22444 7.66711 7.79868 8.05260 8.33373 8.54298 8.57438 8.88371 9.47815 10.98047 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.013065 C = 0.010897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.533989 B = 2142.690171 C = 2568.954490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.044 4.044 3 N -0.487 5.487 4 C 0.111 3.889 5 O -0.204 6.204 6 C -0.008 4.008 7 C 0.320 3.680 8 C -0.129 4.129 9 C -0.523 4.523 10 H 0.061 0.939 11 C 0.089 3.911 12 N -0.841 5.841 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.497 5.497 18 C 0.040 3.960 19 C 0.018 3.982 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.097 0.903 23 H 0.232 0.768 24 H 0.015 0.985 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.259 0.741 28 H 0.015 0.985 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 4.338 1.725 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.163 4.163 3 N -0.217 5.217 4 C -0.115 4.115 5 O -0.090 6.090 6 C -0.063 4.063 7 C 0.231 3.769 8 C -0.187 4.187 9 C -0.561 4.561 10 H 0.079 0.921 11 C -0.119 4.119 12 N -0.474 5.474 13 Si 0.715 3.285 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.218 5.218 18 C -0.109 4.109 19 C -0.131 4.131 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.116 0.884 23 H 0.248 0.752 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.669 4.218 1.769 5.295 hybrid contribution 0.303 0.206 -0.800 0.880 sum 2.972 4.424 0.969 5.417 Atomic orbital electron populations 1.20179 0.87149 1.03472 1.01631 1.21330 0.97836 0.87272 1.09853 1.70171 1.01515 1.32644 1.17380 1.27641 0.97183 0.81016 1.05638 1.84668 1.31317 1.23378 1.69612 1.26053 0.79141 1.01101 1.00009 1.17811 0.88078 0.74118 0.96901 1.21960 0.97948 1.05280 0.93525 1.20683 1.32685 0.96736 1.06025 0.92091 1.24842 0.95119 0.95820 0.96101 1.70009 1.41585 1.01781 1.34064 0.86616 0.80082 0.78465 0.83360 1.19697 1.20910 1.20807 1.62208 1.06340 1.53492 0.99769 1.22211 0.95804 0.97136 0.95709 1.22499 0.97387 0.97977 0.95188 0.92335 0.92596 0.88422 0.75164 0.96650 0.93781 0.87848 0.93068 0.96676 0.94261 0.90881 0.92114 0.93451 0.96747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 8.77 36.01 0.32 -0.98 16 2 C -0.04 -0.95 6.90 -82.81 -0.57 -1.52 16 3 N -0.49 -10.00 11.29 -11.18 -0.13 -10.13 16 4 C 0.11 2.00 13.23 52.10 0.69 2.69 16 5 O -0.20 -4.21 6.22 5.34 0.03 -4.17 16 6 C -0.01 -0.17 4.72 -35.69 -0.17 -0.34 16 7 C 0.32 7.53 0.09 -133.91 -0.01 7.51 16 8 C -0.13 -2.95 7.74 37.16 0.29 -2.66 16 9 C -0.52 -13.16 4.98 -34.44 -0.17 -13.33 16 10 H 0.06 1.59 7.38 -52.49 -0.39 1.20 16 11 C 0.09 2.24 5.23 -17.82 -0.09 2.15 16 12 N -0.84 -21.91 10.80 55.43 0.60 -21.31 16 13 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 N -0.50 -11.52 4.15 -238.12 -0.99 -12.51 16 18 C 0.04 0.87 8.96 60.06 0.54 1.41 16 19 C 0.02 0.37 8.80 60.07 0.53 0.90 16 20 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.10 2.00 5.82 -51.93 -0.30 1.70 16 23 H 0.23 2.85 8.06 -52.49 -0.42 2.42 16 24 H 0.01 0.32 6.35 -51.93 -0.33 -0.01 16 25 H 0.04 0.95 6.07 -51.93 -0.31 0.63 16 26 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 27 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.02 0.33 5.42 -51.93 -0.28 0.05 16 29 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 1.72 7.09 -51.93 -0.37 1.35 16 31 H 0.06 1.23 6.24 -51.93 -0.32 0.90 16 32 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.01 0.29 5.76 -51.93 -0.30 -0.01 16 LS Contribution 257.54 15.07 3.88 3.88 Total: -1.00 -28.09 257.54 -4.43 -32.52 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.15 Total: 1.01 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 1.34 Total: -4.17 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.52 Total: -43.95 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.03 Total: -4.17 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.09 -4.43 -32.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.779 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds