Wall clock time and date at job start Mon Mar 30 2020 02:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34483 * 126.16242 * 2 1 4 4 C 1.30261 * 108.69839 * 179.97438 * 3 2 1 5 5 O 1.33974 * 108.75966 * 359.72784 * 4 3 2 6 6 C 1.34323 * 126.16690 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.44300 * 0.02562 * 6 2 1 8 8 C 1.52999 * 109.47150 * 299.98908 * 7 6 2 9 9 C 1.50697 * 109.47576 * 59.99005 * 7 6 2 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00428 * 180.02562 * 9 7 6 12 12 N 1.31510 * 119.99600 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 120.00227 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46821 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46996 * 120.00312 * 13 11 9 16 16 H 1.48495 * 109.46665 * 239.99993 * 13 11 9 17 17 N 1.46906 * 109.47167 * 179.97438 * 7 6 2 18 18 C 1.46898 * 110.99888 * 299.99784 * 17 7 6 19 19 C 1.46902 * 110.99573 * 63.95150 * 17 7 6 20 20 H 1.09001 * 109.47279 * 270.00591 * 1 2 3 21 21 H 1.08996 * 109.46722 * 30.00725 * 1 2 3 22 22 H 1.09000 * 109.46939 * 150.00747 * 1 2 3 23 23 H 1.07992 * 125.61771 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47362 * 300.00765 * 8 7 6 25 25 H 1.09002 * 109.46716 * 60.00124 * 8 7 6 26 26 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 27 27 H 0.97006 * 120.00212 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.47334 * 60.00212 * 18 17 7 29 29 H 1.09000 * 109.46674 * 180.02562 * 18 17 7 30 30 H 1.08995 * 109.47296 * 299.99911 * 18 17 7 31 31 H 1.09004 * 109.47457 * 60.00221 * 19 17 7 32 32 H 1.09001 * 109.46615 * 179.97438 * 19 17 7 33 33 H 1.08990 * 109.47358 * 299.99539 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5432 0.6948 0.0006 5 8 3.5735 -0.6446 0.0069 6 6 2.2997 -1.0844 0.0005 7 6 1.8493 -2.5225 0.0006 8 6 1.0084 -2.7935 1.2497 9 6 1.0215 -2.7898 -1.2299 10 1 0.8400 -1.9976 -1.9412 11 6 0.4958 -4.0456 -1.4478 12 7 0.7163 -5.0101 -0.5814 13 14 -0.5298 -4.3771 -2.9735 14 1 -0.6284 -3.1360 -3.7829 15 1 0.1144 -5.4442 -3.7807 16 1 -1.8902 -4.8149 -2.5699 17 7 3.0247 -3.4038 0.0006 18 6 3.8571 -3.1710 -1.1872 19 6 3.8072 -3.2376 1.2327 20 1 -0.3634 0.0001 1.0277 21 1 -0.3632 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5137 23 1 4.4066 1.3435 0.0011 24 1 1.6071 -2.6001 2.1398 25 1 0.1363 -2.1396 1.2494 26 1 0.6830 -3.8338 1.2501 27 1 0.3462 -5.8936 -0.7344 28 1 4.1969 -2.1354 -1.1956 29 1 4.7199 -3.8366 -1.1622 30 1 3.2721 -3.3687 -2.0853 31 1 3.1858 -3.4838 2.0938 32 1 4.6711 -3.9018 1.2067 33 1 4.1451 -2.2044 1.3119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260195431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:49 Heat of formation + Delta-G solvation = 18.106584 kcal Electronic energy + Delta-G solvation = -16728.520951 eV Core-core repulsion = 14176.933951 eV Total energy + Delta-G solvation = -2551.587000 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.14192 -38.90262 -36.08359 -34.39794 -32.89780 -30.52166 -28.87896 -27.97030 -26.53737 -24.69652 -23.46499 -22.29496 -20.75013 -18.50716 -17.65801 -17.33934 -16.67463 -16.29075 -15.36020 -15.26300 -15.05949 -14.44774 -14.12069 -13.73923 -13.54018 -13.18021 -13.00472 -12.82828 -12.62908 -12.59394 -12.42830 -12.13606 -11.98410 -11.89812 -11.71860 -11.29304 -11.03098 -10.43200 -9.27527 -8.72471 -7.93952 -6.14402 0.80596 1.45068 1.50588 1.58123 1.89115 2.07967 2.51462 3.20772 3.49051 3.71970 4.20401 4.25072 4.54205 4.65021 4.69425 4.77378 4.82456 4.89290 4.93843 5.01828 5.07962 5.11619 5.18478 5.27250 5.35717 5.42474 5.70424 5.74025 5.93272 6.22084 6.56847 6.78592 6.94228 7.04937 7.53755 9.05197 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.013065 C = 0.010897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.533989 B = 2142.690171 C = 2568.954490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.053 4.053 3 N -0.512 5.512 4 C 0.137 3.863 5 O -0.211 6.211 6 C -0.037 4.037 7 C 0.319 3.681 8 C -0.120 4.120 9 C -0.525 4.525 10 H 0.044 0.956 11 C 0.055 3.945 12 N -0.862 5.862 13 Si 0.938 3.062 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.278 1.278 17 N -0.519 5.519 18 C 0.048 3.952 19 C 0.024 3.976 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.287 0.713 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.258 0.742 28 H 0.018 0.982 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 5.307 1.823 6.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.171 4.171 3 N -0.242 5.242 4 C -0.089 4.089 5 O -0.098 6.098 6 C -0.092 4.092 7 C 0.230 3.770 8 C -0.178 4.178 9 C -0.564 4.564 10 H 0.062 0.938 11 C -0.151 4.151 12 N -0.496 5.496 13 Si 0.765 3.235 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.204 1.204 17 N -0.240 5.240 18 C -0.100 4.100 19 C -0.124 4.124 20 H 0.090 0.910 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.302 0.698 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.490 5.191 1.868 6.528 hybrid contribution 0.127 0.011 -0.819 0.828 sum 3.616 5.203 1.049 6.422 Atomic orbital electron populations 1.20157 0.86336 1.03227 1.02427 1.21656 0.98756 0.87570 1.09095 1.70211 1.02478 1.32349 1.19198 1.28916 0.98116 0.80397 1.01422 1.84635 1.30575 1.24680 1.69953 1.25704 0.79988 1.00769 1.02705 1.17600 0.88146 0.75229 0.96045 1.21818 0.98213 1.03804 0.93979 1.20733 1.32971 0.96256 1.06403 0.93777 1.25335 0.95981 0.95760 0.97997 1.70103 1.42512 1.01889 1.35135 0.85831 0.79025 0.77809 0.80829 1.20029 1.21168 1.20353 1.62129 1.06935 1.53975 1.00995 1.22102 0.95760 0.97743 0.94433 1.22455 0.97525 0.98550 0.93877 0.90984 0.91300 0.90083 0.69829 0.95760 0.93456 0.90081 0.93204 0.96365 0.92459 0.93307 0.92438 0.91784 0.96424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.43 8.77 71.24 0.62 -1.81 16 2 C -0.05 -2.21 6.90 41.26 0.28 -1.93 16 3 N -0.51 -19.84 11.29 -304.06 -3.43 -23.27 16 4 C 0.14 4.48 13.23 130.48 1.73 6.21 16 5 O -0.21 -8.26 6.22 -3.81 -0.02 -8.29 16 6 C -0.04 -1.60 4.72 24.79 0.12 -1.49 16 7 C 0.32 14.92 0.09 2.03 0.00 14.92 16 8 C -0.12 -5.47 7.74 71.98 0.56 -4.92 16 9 C -0.53 -26.62 4.98 25.60 0.13 -26.49 16 10 H 0.04 2.33 7.38 -2.91 -0.02 2.31 16 11 C 0.05 2.77 5.23 84.66 0.44 3.21 16 12 N -0.86 -45.21 10.80 21.45 0.23 -44.98 16 13 Si 0.94 41.17 29.54 68.60 2.03 43.19 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 17 N -0.52 -23.71 4.15 -907.29 -3.76 -27.47 16 18 C 0.05 2.06 8.96 127.69 1.14 3.20 16 19 C 0.02 0.95 8.80 127.69 1.12 2.08 16 20 H 0.07 2.48 7.87 -2.39 -0.02 2.46 16 21 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.08 3.33 5.82 -2.39 -0.01 3.31 16 23 H 0.29 5.52 8.06 -2.91 -0.02 5.50 16 24 H 0.02 1.01 6.35 -2.39 -0.02 0.99 16 25 H 0.05 2.04 6.07 -2.39 -0.01 2.03 16 26 H 0.08 4.06 6.07 -2.39 -0.01 4.04 16 27 H 0.26 13.05 8.31 -92.70 -0.77 12.28 16 28 H 0.02 0.76 5.42 -2.39 -0.01 0.75 16 29 H 0.06 2.19 8.12 -2.39 -0.02 2.17 16 30 H 0.05 2.29 7.09 -2.39 -0.02 2.28 16 31 H 0.06 2.26 6.24 -2.38 -0.01 2.25 16 32 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 33 H 0.02 0.68 5.76 -2.39 -0.01 0.67 16 Total: -1.00 -58.95 257.54 2.30 -56.65 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.11 Total: 11.18 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 6.15 Total: -7.01 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -6.97 Total: -95.72 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.02 Total: -8.29 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -58.95 2.30 -56.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.755 kcal (2) G-P(sol) polarization free energy of solvation -58.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds