Wall clock time and date at job start Mon Mar 30 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46957 * 2 1 4 4 N 1.30832 * 125.86389 * 270.19533 * 3 2 1 5 5 N 1.40061 * 108.34200 * 180.23979 * 4 3 2 6 6 C 1.46506 * 126.03507 * 179.76228 * 5 4 3 7 7 C 1.35132 * 107.93114 * 359.74136 * 5 4 3 8 8 O 1.35760 * 126.19422 * 180.02562 * 7 5 4 9 9 C 1.42890 * 117.00515 * 274.91205 * 8 7 5 10 10 C 1.35950 * 107.61284 * 0.02562 * 7 5 4 11 11 C 1.50694 * 126.08409 * 179.97438 * 10 7 5 12 12 C 1.50699 * 109.47379 * 90.02135 * 11 10 7 13 13 H 1.08002 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99823 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99452 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47109 * 90.00150 * 16 14 12 18 18 H 1.48501 * 109.46737 * 209.99897 * 16 14 12 19 19 H 1.48500 * 109.47110 * 329.99674 * 16 14 12 20 20 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47031 * 299.99291 * 1 2 3 22 22 H 1.08996 * 109.47350 * 60.00183 * 1 2 3 23 23 H 1.09000 * 109.47060 * 239.99961 * 2 1 3 24 24 H 1.08999 * 109.47176 * 120.00560 * 2 1 3 25 25 H 1.08994 * 109.47269 * 274.14461 * 6 5 4 26 26 H 1.09002 * 109.47177 * 34.14441 * 6 5 4 27 27 H 1.08998 * 109.47332 * 154.14567 * 6 5 4 28 28 H 1.09001 * 109.46982 * 64.69374 * 9 8 7 29 29 H 1.08999 * 109.47476 * 184.69249 * 9 8 7 30 30 H 1.09003 * 109.47120 * 304.69601 * 9 8 7 31 31 H 1.09003 * 109.47059 * 330.01861 * 11 10 7 32 32 H 1.08998 * 109.46978 * 210.02764 * 11 10 7 33 33 H 0.97001 * 119.99552 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1447 -1.0603 5 7 2.7361 3.4016 -0.6386 6 6 3.1325 4.5115 -1.5089 7 6 2.7414 3.4100 0.7127 8 8 3.1141 4.4463 1.5065 9 6 4.5077 4.5737 1.7955 10 6 2.3059 2.1928 1.1333 11 6 2.1509 1.7520 2.5660 12 6 0.7616 2.0841 3.0463 13 1 0.0611 2.5665 2.3807 14 6 0.3853 1.7730 4.3357 15 7 1.2385 1.1860 5.1463 16 14 -1.3371 2.1841 4.9307 17 1 -2.2424 1.0396 4.6551 18 1 -1.3059 2.4498 6.3915 19 1 -1.8322 3.3896 4.2188 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 4.1806 4.3991 -1.7865 26 1 2.5161 4.5064 -2.4079 27 1 2.9959 5.4547 -0.9800 28 1 5.0516 4.7865 0.8751 29 1 4.6589 5.3885 2.5035 30 1 4.8756 3.6434 2.2281 31 1 2.8831 2.2689 3.1864 32 1 2.3116 0.6761 2.6345 33 1 0.9735 0.9669 6.0533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:36 Heat of formation + Delta-G solvation = 29.223646 kcal Electronic energy + Delta-G solvation = -15782.929232 eV Core-core repulsion = 13231.824304 eV Total energy + Delta-G solvation = -2551.104928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76945 -37.45072 -34.35058 -32.87597 -31.30015 -30.03130 -27.78303 -26.18630 -25.58483 -23.07631 -22.29217 -19.94011 -18.87932 -16.86681 -16.26409 -15.59591 -15.31490 -14.55945 -14.23432 -14.02441 -13.61294 -13.18525 -12.71791 -12.62608 -12.14460 -11.91848 -11.64522 -11.32240 -11.22301 -10.89297 -10.84589 -10.60513 -10.42567 -10.26129 -9.59407 -9.36947 -9.27817 -8.44763 -8.28466 -7.36288 -5.90631 -3.91715 2.24688 2.89274 3.37401 3.40460 3.44289 3.51333 4.21778 4.55807 4.92610 5.34508 5.37518 5.42387 5.44984 5.57064 5.60122 5.67510 5.82441 6.02192 6.12255 6.21200 6.37471 6.48169 6.73058 6.82232 6.92339 6.99968 7.40186 7.69045 7.83118 8.05582 8.14617 8.37809 8.51650 9.11783 9.70261 11.18896 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.010295 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.753021 B = 2718.990431 C = 3386.671523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C 0.083 3.917 4 N -0.296 5.296 5 N -0.397 5.397 6 C 0.108 3.892 7 C 0.219 3.781 8 O -0.298 6.298 9 C 0.033 3.967 10 C -0.172 4.172 11 C 0.092 3.908 12 C -0.495 4.495 13 H 0.053 0.947 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 H 0.053 0.947 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.028 0.972 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 3.369 -9.522 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.081 4.081 4 N -0.121 5.121 5 N -0.191 5.191 6 C -0.034 4.034 7 C 0.054 3.946 8 O -0.207 6.207 9 C -0.062 4.062 10 C -0.183 4.183 11 C 0.054 3.946 12 C -0.533 4.533 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.072 0.928 21 H 0.095 0.905 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.725 3.678 -10.515 12.100 hybrid contribution -0.657 0.455 1.144 1.395 sum 4.068 4.133 -9.372 11.021 Atomic orbital electron populations 1.21705 0.94419 1.01265 1.02899 1.19848 0.96327 0.88732 1.02440 1.22015 0.98841 0.97088 0.90198 1.77178 1.23064 0.89575 1.22322 1.48648 1.54518 1.11732 1.04214 1.21616 1.00216 0.86879 0.94735 1.18784 1.04857 0.90028 0.80883 1.86167 1.24561 1.45894 1.64091 1.23024 0.80752 1.02689 0.99755 1.20626 1.07278 0.91137 0.99295 1.17608 0.97077 0.96297 0.83643 1.21067 0.97439 1.38098 0.96724 0.92858 1.24958 0.97063 0.95510 0.96780 1.69950 1.34678 1.42418 1.06748 0.86641 0.85104 0.78780 0.77810 1.20681 1.21344 1.19986 0.92796 0.90517 0.93535 0.91712 0.89529 0.91920 0.90015 0.89985 0.94538 0.88641 0.92750 0.95999 0.95389 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 37.16 0.37 -2.16 16 2 C -0.03 -0.62 6.31 -27.88 -0.18 -0.80 16 3 C 0.08 1.77 6.47 -82.43 -0.53 1.23 16 4 N -0.30 -6.04 12.57 33.66 0.42 -5.62 16 5 N -0.40 -7.60 4.02 -68.28 -0.27 -7.87 16 6 C 0.11 1.44 11.44 59.85 0.68 2.12 16 7 C 0.22 4.71 6.93 -16.92 -0.12 4.59 16 8 O -0.30 -6.03 10.38 -18.99 -0.20 -6.23 16 9 C 0.03 0.51 11.13 101.05 1.12 1.63 16 10 C -0.17 -4.03 5.31 -104.85 -0.56 -4.59 16 11 C 0.09 2.42 5.24 -29.04 -0.15 2.27 16 12 C -0.49 -14.11 9.07 -34.44 -0.31 -14.42 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.08 1.56 8.12 -51.93 -0.42 1.14 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.09 1.60 7.25 -51.93 -0.38 1.22 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.76 7.25 -51.93 -0.38 0.38 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 288.36 15.07 4.35 4.35 Total: -1.00 -32.62 288.36 -4.69 -37.31 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.94 Total: -4.40 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.23 Total: -8.58 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.89 Total: -39.40 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.20 Total: -6.23 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.62 -4.69 -37.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.536 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds