Wall clock time and date at job start Mon Mar 30 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46957 * 2 1 4 4 N 1.30832 * 125.86389 * 270.19533 * 3 2 1 5 5 N 1.40061 * 108.34200 * 180.23979 * 4 3 2 6 6 C 1.46506 * 126.03507 * 179.76228 * 5 4 3 7 7 C 1.35132 * 107.93114 * 359.74136 * 5 4 3 8 8 O 1.35760 * 126.19422 * 180.02562 * 7 5 4 9 9 C 1.42890 * 117.00515 * 274.91205 * 8 7 5 10 10 C 1.35950 * 107.61284 * 0.02562 * 7 5 4 11 11 C 1.50694 * 126.08409 * 179.97438 * 10 7 5 12 12 C 1.50699 * 109.47379 * 90.02135 * 11 10 7 13 13 H 1.08002 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99823 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99452 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47109 * 90.00150 * 16 14 12 18 18 H 1.48501 * 109.46737 * 209.99897 * 16 14 12 19 19 H 1.48500 * 109.47110 * 329.99674 * 16 14 12 20 20 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47031 * 299.99291 * 1 2 3 22 22 H 1.08996 * 109.47350 * 60.00183 * 1 2 3 23 23 H 1.09000 * 109.47060 * 239.99961 * 2 1 3 24 24 H 1.08999 * 109.47176 * 120.00560 * 2 1 3 25 25 H 1.08994 * 109.47269 * 274.14461 * 6 5 4 26 26 H 1.09002 * 109.47177 * 34.14441 * 6 5 4 27 27 H 1.08998 * 109.47332 * 154.14567 * 6 5 4 28 28 H 1.09001 * 109.46982 * 64.69374 * 9 8 7 29 29 H 1.08999 * 109.47476 * 184.69249 * 9 8 7 30 30 H 1.09003 * 109.47120 * 304.69601 * 9 8 7 31 31 H 1.09003 * 109.47059 * 330.01861 * 11 10 7 32 32 H 1.08998 * 109.46978 * 210.02764 * 11 10 7 33 33 H 0.97001 * 119.99552 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1447 -1.0603 5 7 2.7361 3.4016 -0.6386 6 6 3.1325 4.5115 -1.5089 7 6 2.7414 3.4100 0.7127 8 8 3.1141 4.4463 1.5065 9 6 4.5077 4.5737 1.7955 10 6 2.3059 2.1928 1.1333 11 6 2.1509 1.7520 2.5660 12 6 0.7616 2.0841 3.0463 13 1 0.0611 2.5665 2.3807 14 6 0.3853 1.7730 4.3357 15 7 1.2385 1.1860 5.1463 16 14 -1.3371 2.1841 4.9307 17 1 -2.2424 1.0396 4.6551 18 1 -1.3059 2.4498 6.3915 19 1 -1.8322 3.3896 4.2188 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 4.1806 4.3991 -1.7865 26 1 2.5161 4.5064 -2.4079 27 1 2.9959 5.4547 -0.9800 28 1 5.0516 4.7865 0.8751 29 1 4.6589 5.3885 2.5035 30 1 4.8756 3.6434 2.2281 31 1 2.8831 2.2689 3.1864 32 1 2.3116 0.6761 2.6345 33 1 0.9735 0.9669 6.0533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260213109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:36 Heat of formation + Delta-G solvation = 7.241348 kcal Electronic energy + Delta-G solvation = -15783.882456 eV Core-core repulsion = 13231.824304 eV Total energy + Delta-G solvation = -2552.058152 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34294 -38.95699 -35.98535 -34.84527 -32.80970 -31.77312 -29.35138 -27.62540 -27.19646 -24.84129 -23.94951 -21.53147 -20.46763 -18.43150 -18.33204 -17.13739 -16.80181 -16.53886 -15.57884 -15.52475 -14.99786 -14.62933 -14.39447 -14.07705 -13.77784 -13.49657 -13.37897 -12.90152 -12.71174 -12.65710 -12.54816 -12.30179 -12.12230 -11.80945 -11.49768 -11.41465 -10.94744 -10.48677 -9.94581 -9.08486 -8.09066 -6.19606 0.69146 1.41146 1.42112 1.46274 1.52885 1.79112 2.47338 2.77754 3.19883 3.58038 4.11484 4.25934 4.30245 4.36730 4.40082 4.57655 4.59573 4.61582 4.66052 4.70874 4.81439 5.07301 5.12433 5.31255 5.36939 5.47347 5.52461 5.72304 5.84563 5.85872 6.32458 6.63073 6.78041 6.89222 7.46397 8.98892 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.010295 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.753021 B = 2718.990431 C = 3386.671523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 C 0.078 3.922 4 N -0.299 5.299 5 N -0.389 5.389 6 C 0.095 3.905 7 C 0.227 3.773 8 O -0.320 6.320 9 C 0.029 3.971 10 C -0.221 4.221 11 C 0.109 3.891 12 C -0.507 4.507 13 H 0.041 0.959 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.274 1.274 20 H 0.082 0.918 21 H 0.039 0.961 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.038 0.962 31 H -0.007 1.007 32 H 0.008 0.992 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 4.213 -10.862 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.087 4.087 4 N -0.125 5.125 5 N -0.183 5.183 6 C -0.045 4.045 7 C 0.060 3.940 8 O -0.230 6.230 9 C -0.066 4.066 10 C -0.232 4.232 11 C 0.072 3.928 12 C -0.545 4.545 13 H 0.059 0.941 14 C -0.189 4.189 15 N -0.570 5.570 16 Si 0.779 3.221 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.199 1.199 20 H 0.100 0.900 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.027 0.973 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.503 4.533 -11.886 13.495 hybrid contribution -0.480 0.293 1.518 1.619 sum 4.023 4.826 -10.368 12.123 Atomic orbital electron populations 1.21629 0.93916 1.02648 1.01328 1.19942 0.96691 0.87531 1.03252 1.22296 0.98730 0.98144 0.89486 1.77126 1.23355 0.90193 1.21862 1.49017 1.52971 1.12347 1.03929 1.22098 1.02223 0.85503 0.94628 1.18785 1.03603 0.89502 0.82124 1.86095 1.27536 1.45250 1.64164 1.23300 0.78342 1.02959 1.01952 1.20439 1.11173 0.93330 0.98306 1.17206 0.95354 0.94610 0.85679 1.21249 0.98236 1.38088 0.96949 0.94055 1.25753 1.01062 0.95240 0.96838 1.70061 1.36603 1.43162 1.07138 0.85624 0.80351 0.78765 0.77397 1.19440 1.20525 1.19868 0.89960 0.94166 0.92824 0.88794 0.90685 0.89122 0.88234 0.88578 0.91379 0.85975 0.94294 0.98891 0.97334 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.89 71.98 0.71 -4.01 16 2 C -0.03 -1.26 6.31 29.85 0.19 -1.07 16 3 C 0.08 3.29 6.47 43.09 0.28 3.57 16 4 N -0.30 -11.83 12.57 -47.42 -0.60 -12.43 16 5 N -0.39 -14.23 4.02 -481.25 -1.93 -16.16 16 6 C 0.10 2.23 11.44 127.77 1.46 3.69 16 7 C 0.23 9.70 6.93 83.65 0.58 10.28 16 8 O -0.32 -12.81 10.38 -90.87 -0.94 -13.75 16 9 C 0.03 0.84 11.13 113.37 1.26 2.10 16 10 C -0.22 -10.59 5.31 -20.01 -0.11 -10.70 16 11 C 0.11 6.07 5.24 29.10 0.15 6.22 16 12 C -0.51 -29.83 9.07 25.60 0.23 -29.60 16 13 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 14 C 0.01 0.50 5.46 84.65 0.46 0.97 16 15 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 16 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 20 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 21 H 0.04 1.66 8.12 -2.38 -0.02 1.64 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 24 H 0.07 2.84 7.25 -2.39 -0.02 2.82 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.10 2.01 8.05 -2.39 -0.02 1.99 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.01 0.49 7.25 -2.39 -0.02 0.47 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.43 288.36 5.14 -66.29 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.08 Total: 3.14 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 5.22 Total: -18.55 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -2.24 Total: -84.60 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.94 Total: -13.75 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.43 5.14 -66.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.530 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds