Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00191 * 2 1 4 4 H 1.09008 * 109.47453 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46995 * 60.00413 * 3 2 1 6 6 H 1.08005 * 120.00138 * 240.00003 * 5 3 2 7 7 C 1.37885 * 119.99802 * 60.00251 * 5 3 2 8 8 N 1.31507 * 119.99732 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99776 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47239 * 59.99693 * 9 7 5 11 11 H 1.48505 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47224 * 299.99591 * 9 7 5 13 13 C 1.50700 * 109.47465 * 300.00657 * 3 2 1 14 14 C 1.41384 * 126.80496 * 245.29319 * 13 3 2 15 15 C 1.35442 * 103.98604 * 180.09068 * 14 13 3 16 16 C 1.50708 * 126.77682 * 179.90759 * 15 14 13 17 17 C 1.52997 * 109.47141 * 239.71152 * 16 15 14 18 18 C 1.52992 * 109.47025 * 119.70759 * 16 15 14 19 19 O 1.34038 * 106.44810 * 359.64481 * 15 14 13 20 20 N 1.20913 * 111.56891 * 0.24208 * 19 15 14 21 21 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46769 * 299.99581 * 1 2 3 23 23 H 1.08999 * 109.47688 * 59.99096 * 1 2 3 24 24 H 1.00898 * 111.00685 * 123.96394 * 2 1 3 25 25 H 0.97003 * 119.99694 * 179.97438 * 8 7 5 26 26 H 1.08003 * 128.00353 * 359.97438 * 14 13 3 27 27 H 1.09002 * 109.46828 * 359.71021 * 16 15 14 28 28 H 1.09002 * 109.47153 * 299.99670 * 17 16 15 29 29 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 30 30 H 1.09004 * 109.47261 * 59.99842 * 17 16 15 31 31 H 1.09002 * 109.47103 * 60.00431 * 18 16 15 32 32 H 1.09001 * 109.47066 * 180.02562 * 18 16 15 33 33 H 1.08996 * 109.47747 * 300.00019 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0851 1.3423 -0.0005 5 6 1.5123 2.0949 1.2305 6 1 0.9151 2.9893 1.1315 7 6 1.8329 1.6150 2.4828 8 7 2.5598 0.5257 2.6032 9 14 1.2335 2.5114 4.0080 10 1 -0.2510 2.5505 4.0079 11 1 1.7093 1.7981 5.2205 12 1 1.7651 3.8980 4.0083 13 6 1.5122 2.0951 -1.2304 14 6 2.3055 2.5708 -2.2996 15 6 1.4112 3.1402 -3.1426 16 6 1.7123 3.8134 -4.4569 17 6 1.2435 5.2688 -4.4036 18 6 0.9796 3.0825 -5.5838 19 8 0.2050 2.9815 -2.5800 20 7 0.2809 2.4009 -1.5221 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8307 -0.5262 0.7812 25 1 2.7856 0.1883 3.4842 26 1 3.3768 2.4988 -2.4161 27 1 2.7859 3.7840 -4.6426 28 1 0.1698 5.2982 -4.2179 29 1 1.4617 5.7558 -5.3540 30 1 1.7655 5.7895 -3.6007 31 1 -0.0940 3.1119 -5.3981 32 1 1.1977 3.5692 -6.5344 33 1 1.3136 2.0457 -5.6218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260216624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = 48.975613 kcal Electronic energy + Delta-G solvation = -15680.847441 eV Core-core repulsion = 13130.599023 eV Total energy + Delta-G solvation = -2550.248419 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.07173 -36.05839 -35.76980 -32.65589 -31.62337 -29.84299 -27.34538 -27.17935 -24.33540 -23.07547 -22.48576 -21.35056 -18.34706 -16.94542 -16.46235 -16.13903 -15.10019 -14.87871 -14.23635 -14.01902 -13.19806 -13.02561 -12.86414 -12.77534 -12.22107 -11.99801 -11.39053 -11.25676 -11.14440 -11.08192 -10.86811 -10.75643 -10.68116 -10.12390 -9.86917 -9.68354 -9.14959 -8.62859 -8.58646 -7.04339 -6.09869 -4.25668 2.20854 3.21693 3.25963 3.29134 3.35532 3.76906 4.32753 4.75573 5.02130 5.10392 5.12087 5.30224 5.47022 5.58623 5.78762 5.79859 5.86090 5.99584 6.13223 6.19730 6.21153 6.29181 6.43329 6.64937 6.90724 6.95878 7.25433 7.50163 7.73784 8.04269 8.49486 8.82530 9.03386 9.25452 9.44372 10.87411 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041008 B = 0.007426 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.631487 B = 3769.446950 C = 4039.306468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.691 5.691 3 C 0.273 3.727 4 H 0.059 0.941 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.074 3.926 14 C -0.228 4.228 15 C -0.055 4.055 16 C -0.006 4.006 17 C -0.148 4.148 18 C -0.148 4.148 19 O 0.081 5.919 20 N -0.363 5.363 21 H 0.031 0.969 22 H 0.027 0.973 23 H 0.055 0.945 24 H 0.361 0.639 25 H 0.267 0.733 26 H 0.160 0.840 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 5.003 -12.203 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.326 5.326 3 C 0.164 3.836 4 H 0.077 0.923 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.201 1.201 13 C -0.086 4.086 14 C -0.249 4.249 15 C -0.120 4.120 16 C -0.026 4.026 17 C -0.206 4.206 18 C -0.205 4.205 19 O 0.019 5.981 20 N -0.070 5.070 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.183 0.817 25 H 0.077 0.923 26 H 0.178 0.822 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.474 4.611 -12.143 13.072 hybrid contribution 0.413 0.736 1.743 1.937 sum -1.060 5.347 -10.400 11.742 Atomic orbital electron populations 1.22018 0.90685 0.97949 1.00804 1.60955 1.06400 1.14996 1.50204 1.17640 0.95440 0.85300 0.85194 0.92295 1.21613 1.33511 1.11646 0.90736 0.92602 1.24971 0.94341 0.95073 0.99104 1.69701 1.37530 1.21830 1.24387 0.86535 0.79285 0.79844 0.81728 1.20168 1.21042 1.20110 1.24146 0.87729 0.98409 0.98294 1.22429 1.01385 1.05683 0.95429 1.24202 0.85839 1.03537 0.98389 1.19611 1.01105 0.94314 0.87566 1.21864 1.02226 0.94465 1.01996 1.21859 1.01073 1.00521 0.97051 1.84781 1.30123 1.56892 1.26333 1.73831 1.22142 1.12949 0.98072 0.95000 0.95471 0.92590 0.81686 0.92276 0.82219 0.88689 0.91947 0.91936 0.92198 0.91955 0.91947 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 9.97 60.06 0.60 1.47 16 2 N -0.69 -17.56 6.75 -116.50 -0.79 -18.34 16 3 C 0.27 7.12 2.98 -70.02 -0.21 6.91 16 4 H 0.06 1.60 8.14 -51.92 -0.42 1.18 16 5 C -0.53 -14.99 7.19 -34.44 -0.25 -15.24 16 6 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 7 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 8 N -0.90 -24.85 11.54 55.43 0.64 -24.21 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.07 1.73 5.62 -82.10 -0.46 1.26 16 14 C -0.23 -4.38 11.04 -39.38 -0.43 -4.81 16 15 C -0.06 -0.94 6.00 -35.30 -0.21 -1.15 16 16 C -0.01 -0.08 3.34 -91.77 -0.31 -0.38 16 17 C -0.15 -1.56 9.18 37.16 0.34 -1.22 16 18 C -0.15 -1.53 9.17 37.15 0.34 -1.19 16 19 O 0.08 1.61 11.20 17.18 0.19 1.81 16 20 N -0.36 -8.41 9.73 33.42 0.33 -8.08 16 21 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.03 0.71 7.09 -51.93 -0.37 0.34 16 23 H 0.06 1.35 5.60 -51.93 -0.29 1.06 16 24 H 0.36 9.58 6.90 -39.29 -0.27 9.31 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.16 2.65 8.06 -52.48 -0.42 2.23 16 27 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 276.89 15.07 4.17 4.17 Total: -1.00 -29.52 276.89 -5.86 -35.39 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.70 Total: 5.28 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.69 Total: -12.58 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.18 Total: -50.64 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.52 -5.86 -35.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.361 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds