Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00191 * 2 1 4 4 H 1.09008 * 109.47453 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46995 * 60.00413 * 3 2 1 6 6 H 1.08005 * 120.00138 * 240.00003 * 5 3 2 7 7 C 1.37885 * 119.99802 * 60.00251 * 5 3 2 8 8 N 1.31507 * 119.99732 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99776 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47239 * 59.99693 * 9 7 5 11 11 H 1.48505 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47224 * 299.99591 * 9 7 5 13 13 C 1.50700 * 109.47465 * 300.00657 * 3 2 1 14 14 C 1.41384 * 126.80496 * 245.29319 * 13 3 2 15 15 C 1.35442 * 103.98604 * 180.09068 * 14 13 3 16 16 C 1.50708 * 126.77682 * 179.90759 * 15 14 13 17 17 C 1.52997 * 109.47141 * 239.71152 * 16 15 14 18 18 C 1.52992 * 109.47025 * 119.70759 * 16 15 14 19 19 O 1.34038 * 106.44810 * 359.64481 * 15 14 13 20 20 N 1.20913 * 111.56891 * 0.24208 * 19 15 14 21 21 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46769 * 299.99581 * 1 2 3 23 23 H 1.08999 * 109.47688 * 59.99096 * 1 2 3 24 24 H 1.00898 * 111.00685 * 123.96394 * 2 1 3 25 25 H 0.97003 * 119.99694 * 179.97438 * 8 7 5 26 26 H 1.08003 * 128.00353 * 359.97438 * 14 13 3 27 27 H 1.09002 * 109.46828 * 359.71021 * 16 15 14 28 28 H 1.09002 * 109.47153 * 299.99670 * 17 16 15 29 29 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 30 30 H 1.09004 * 109.47261 * 59.99842 * 17 16 15 31 31 H 1.09002 * 109.47103 * 60.00431 * 18 16 15 32 32 H 1.09001 * 109.47066 * 180.02562 * 18 16 15 33 33 H 1.08996 * 109.47747 * 300.00019 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0851 1.3423 -0.0005 5 6 1.5123 2.0949 1.2305 6 1 0.9151 2.9893 1.1315 7 6 1.8329 1.6150 2.4828 8 7 2.5598 0.5257 2.6032 9 14 1.2335 2.5114 4.0080 10 1 -0.2510 2.5505 4.0079 11 1 1.7093 1.7981 5.2205 12 1 1.7651 3.8980 4.0083 13 6 1.5122 2.0951 -1.2304 14 6 2.3055 2.5708 -2.2996 15 6 1.4112 3.1402 -3.1426 16 6 1.7123 3.8134 -4.4569 17 6 1.2435 5.2688 -4.4036 18 6 0.9796 3.0825 -5.5838 19 8 0.2050 2.9815 -2.5800 20 7 0.2809 2.4009 -1.5221 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8307 -0.5262 0.7812 25 1 2.7856 0.1883 3.4842 26 1 3.3768 2.4988 -2.4161 27 1 2.7859 3.7840 -4.6426 28 1 0.1698 5.2982 -4.2179 29 1 1.4617 5.7558 -5.3540 30 1 1.7655 5.7895 -3.6007 31 1 -0.0940 3.1119 -5.3981 32 1 1.1977 3.5692 -6.5344 33 1 1.3136 2.0457 -5.6218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260216624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = 29.553286 kcal Electronic energy + Delta-G solvation = -15681.689657 eV Core-core repulsion = 13130.599023 eV Total energy + Delta-G solvation = -2551.090634 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.71238 -37.99000 -36.83922 -34.47430 -33.59942 -31.31752 -29.36730 -27.98266 -26.38630 -24.82137 -23.84084 -22.94167 -19.96023 -18.72386 -18.08757 -17.95196 -16.90422 -16.40572 -15.88961 -15.37438 -14.85978 -14.72959 -14.26551 -14.06508 -13.93836 -13.12554 -12.98255 -12.89121 -12.83352 -12.68895 -12.27459 -12.12370 -12.04368 -11.93077 -11.79701 -11.49381 -10.84204 -10.74466 -10.10192 -9.12726 -8.19465 -6.43815 0.75411 1.32256 1.32778 1.41058 1.55869 2.31588 2.43495 2.97945 3.58834 3.64547 4.04950 4.15473 4.22593 4.32509 4.48070 4.68044 4.70731 4.79952 4.85309 4.93752 5.00469 5.05909 5.11439 5.21736 5.29533 5.40729 5.43733 5.47047 5.57893 5.96287 6.43359 6.67884 6.93414 7.28652 7.66951 8.75569 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041008 B = 0.007426 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.631487 B = 3769.446950 C = 4039.306468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.688 5.688 3 C 0.274 3.726 4 H 0.039 0.961 5 C -0.553 4.553 6 H 0.035 0.965 7 C 0.029 3.971 8 N -0.911 5.911 9 Si 0.956 3.044 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.272 1.272 13 C 0.041 3.959 14 C -0.245 4.245 15 C -0.030 4.030 16 C -0.006 4.006 17 C -0.146 4.146 18 C -0.145 4.145 19 O 0.084 5.916 20 N -0.392 5.392 21 H 0.056 0.944 22 H 0.001 0.999 23 H 0.055 0.945 24 H 0.352 0.648 25 H 0.272 0.728 26 H 0.182 0.818 27 H 0.120 0.880 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 5.910 -13.629 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.321 5.321 3 C 0.165 3.835 4 H 0.057 0.943 5 C -0.593 4.593 6 H 0.054 0.946 7 C -0.172 4.172 8 N -0.550 5.550 9 Si 0.781 3.219 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.197 1.197 13 C -0.117 4.117 14 C -0.266 4.266 15 C -0.094 4.094 16 C -0.026 4.026 17 C -0.204 4.204 18 C -0.203 4.203 19 O 0.020 5.980 20 N -0.099 5.099 21 H 0.075 0.925 22 H 0.020 0.980 23 H 0.074 0.926 24 H 0.173 0.827 25 H 0.081 0.919 26 H 0.200 0.800 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.285 5.512 -13.571 14.704 hybrid contribution 0.357 0.481 2.086 2.170 sum -0.928 5.993 -11.485 12.988 Atomic orbital electron populations 1.21948 0.89957 0.99071 0.99502 1.60967 1.06952 1.14765 1.49429 1.17430 0.94278 0.85604 0.86149 0.94304 1.21691 1.33932 1.11441 0.92248 0.94637 1.25631 0.94340 0.95776 1.01449 1.69772 1.37649 1.22374 1.25179 0.85651 0.78401 0.79006 0.78867 1.20576 1.19651 1.19701 1.24005 0.88987 0.99865 0.98857 1.22686 1.02702 1.06489 0.94771 1.25119 0.83878 1.01177 0.99217 1.19974 1.02931 0.94706 0.84962 1.21876 1.01471 0.93465 1.03561 1.21865 1.00238 1.00341 0.97813 1.84720 1.31543 1.56193 1.25497 1.73788 1.22451 1.14127 0.99520 0.92548 0.98049 0.92608 0.82711 0.91887 0.80018 0.86217 0.92847 0.88603 0.93067 0.92820 0.88672 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.25 9.97 127.69 1.27 3.52 16 2 N -0.69 -35.62 6.75 -522.49 -3.53 -39.14 16 3 C 0.27 14.70 2.98 43.42 0.13 14.82 16 4 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 5 C -0.55 -31.82 7.19 25.60 0.18 -31.63 16 6 H 0.04 2.14 7.74 -2.91 -0.02 2.11 16 7 C 0.03 1.61 5.38 84.66 0.46 2.07 16 8 N -0.91 -50.96 11.54 21.45 0.25 -50.71 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.04 1.96 5.62 43.58 0.24 2.21 16 14 C -0.24 -9.28 11.04 22.40 0.25 -9.03 16 15 C -0.03 -0.96 6.00 25.04 0.15 -0.81 16 16 C -0.01 -0.13 3.34 -11.54 -0.04 -0.17 16 17 C -0.15 -2.62 9.18 71.98 0.66 -1.96 16 18 C -0.15 -2.52 9.17 71.98 0.66 -1.86 16 19 O 0.08 3.31 11.20 71.66 0.80 4.11 16 20 N -0.39 -18.42 9.73 -49.55 -0.48 -18.90 16 21 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.00 0.05 7.09 -2.39 -0.02 0.03 16 23 H 0.06 2.73 5.60 -2.39 -0.01 2.72 16 24 H 0.35 19.05 6.90 -89.70 -0.62 18.43 16 25 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.18 5.84 8.06 -2.91 -0.02 5.81 16 27 H 0.12 1.95 8.12 -2.39 -0.02 1.93 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -64.55 276.89 3.51 -61.04 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.48 Total: 19.89 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 3.97 Total: -22.84 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.76 Total: -108.76 kcal Atomic # 8 Polarization: 3.31 SS G_CDS: 0.80 Total: 4.11 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -64.55 3.51 -61.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.588 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds