Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 120.00048 * 2 1 4 4 H 1.08000 * 120.00142 * 203.12189 * 3 2 1 5 5 C 1.38809 * 120.00300 * 23.12539 * 3 2 1 6 6 N 1.31627 * 119.99779 * 11.89327 * 5 3 2 7 7 Si 1.86797 * 120.00515 * 191.89636 * 5 3 2 8 8 H 1.48509 * 109.46870 * 59.99817 * 7 5 3 9 9 H 1.48494 * 109.47266 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47091 * 300.00097 * 7 5 3 11 11 C 1.46500 * 119.99856 * 180.02562 * 2 1 3 12 12 C 1.53500 * 114.20706 * 60.00336 * 11 2 1 13 13 N 1.47064 * 87.98386 * 220.34338 * 12 11 2 14 14 C 1.34777 * 136.05788 * 207.08018 * 13 12 11 15 15 O 1.21281 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00227 * 180.27909 * 14 13 12 17 17 C 1.53001 * 117.50150 * 248.47497 * 16 14 13 18 18 C 1.53003 * 117.50189 * 179.81489 * 16 14 13 19 19 C 1.47068 * 87.88711 * 27.34069 * 13 12 11 20 20 H 1.08997 * 109.46806 * 274.07575 * 1 2 3 21 21 H 1.09000 * 109.46563 * 34.07149 * 1 2 3 22 22 H 1.08997 * 109.46709 * 154.06973 * 1 2 3 23 23 H 0.96999 * 119.99991 * 179.97438 * 6 5 3 24 24 H 1.09000 * 113.28016 * 193.06470 * 11 2 1 25 25 H 1.09001 * 113.46768 * 105.56431 * 12 11 2 26 26 H 1.09002 * 113.51690 * 335.13049 * 12 11 2 27 27 H 1.09008 * 115.55297 * 34.14031 * 16 14 13 28 28 H 1.09004 * 117.49419 * 359.97438 * 17 16 14 29 29 H 1.08998 * 117.50303 * 145.01544 * 17 16 14 30 30 H 1.08994 * 117.49949 * 214.97844 * 18 16 14 31 31 H 1.09001 * 117.49248 * 359.97137 * 18 16 14 32 32 H 1.09004 * 113.46716 * 87.43179 * 19 13 12 33 33 H 1.08995 * 113.47234 * 217.87897 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1647 1.2235 -0.3673 5 6 1.5394 2.3398 0.4721 6 7 0.4027 2.2606 1.1311 7 14 2.3311 4.0049 0.1723 8 1 2.4563 4.2375 -1.2891 9 1 1.4871 5.0694 0.7719 10 1 3.6789 4.0315 0.7950 11 6 2.1975 -1.2687 -0.0006 12 6 1.9060 -2.1633 -1.2135 13 7 1.9119 -3.3155 -0.2996 14 6 2.1757 -4.6333 -0.4012 15 8 2.5021 -5.1058 -1.4694 16 6 2.0596 -5.5206 0.8113 17 6 3.3514 -6.1084 1.3829 18 6 2.3681 -7.0083 0.6302 19 6 1.4969 -2.3982 0.7724 20 1 -0.3633 0.0730 1.0251 21 1 -0.3632 0.8513 -0.5757 22 1 -0.3632 -0.9242 -0.4494 23 1 -0.0236 3.0669 1.4613 24 1 3.2576 -1.1543 0.2258 25 1 2.7160 -2.1834 -1.9426 26 1 0.9337 -1.9753 -1.6688 27 1 1.2735 -5.2519 1.5171 28 1 4.2852 -5.8536 0.8817 29 1 3.4150 -6.2267 2.4646 30 1 1.7852 -7.7181 1.2170 31 1 2.6545 -7.3451 -0.3661 32 1 0.4164 -2.2716 0.8412 33 1 1.9582 -2.6185 1.7350 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260222573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = 38.548281 kcal Electronic energy + Delta-G solvation = -15350.461926 eV Core-core repulsion = 12799.761344 eV Total energy + Delta-G solvation = -2550.700582 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.46705 -39.58238 -36.96872 -36.38684 -32.99785 -30.09528 -28.09131 -27.00914 -25.68641 -24.05641 -23.30349 -21.17600 -19.66274 -18.94104 -18.39620 -17.40333 -17.00618 -16.31346 -15.88744 -15.39005 -14.96043 -14.69009 -14.25550 -14.04496 -13.52666 -13.31725 -12.98157 -12.73823 -12.66198 -12.44033 -12.40686 -12.01768 -11.92379 -11.74207 -11.55344 -11.45721 -10.91975 -10.60207 -9.71482 -8.80039 -7.83907 -5.34181 1.41371 1.51085 1.53012 1.59052 1.80689 2.53211 2.91126 3.25731 3.40672 3.70228 3.81362 3.84436 3.99579 4.11275 4.17629 4.31400 4.45773 4.59251 4.70225 4.72776 4.75134 4.85883 4.95485 5.06097 5.19891 5.22615 5.38453 5.65358 5.72953 6.31237 6.74416 7.07057 7.14043 7.81950 8.25890 9.18665 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059569 B = 0.005623 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.926572 B = 4978.325710 C = 5009.282375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.593 5.593 3 C -0.273 4.273 4 H 0.074 0.926 5 C -0.043 4.043 6 N -0.933 5.933 7 Si 0.969 3.031 8 H -0.281 1.281 9 H -0.295 1.295 10 H -0.274 1.274 11 C 0.152 3.848 12 C 0.074 3.926 13 N -0.636 5.636 14 C 0.560 3.440 15 O -0.596 6.596 16 C -0.201 4.201 17 C -0.139 4.139 18 C -0.143 4.143 19 C 0.090 3.910 20 H 0.015 0.985 21 H 0.018 0.982 22 H 0.030 0.970 23 H 0.250 0.750 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -12.730 2.880 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.313 5.313 3 C -0.403 4.403 4 H 0.091 0.909 5 C -0.239 4.239 6 N -0.579 5.579 7 Si 0.797 3.203 8 H -0.207 1.207 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.042 3.958 12 C -0.052 4.052 13 N -0.369 5.369 14 C 0.353 3.647 15 O -0.478 6.478 16 C -0.222 4.222 17 C -0.176 4.176 18 C -0.180 4.180 19 C -0.035 4.035 20 H 0.034 0.966 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.159 0.841 28 H 0.105 0.895 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.375 -13.023 2.385 13.451 hybrid contribution -0.019 1.240 -0.379 1.297 sum 2.356 -11.783 2.006 12.182 Atomic orbital electron populations 1.20599 0.82221 0.96063 0.98185 1.43984 1.02176 1.00733 1.84452 1.19514 0.98905 0.86474 1.35431 0.90863 1.25756 0.98348 1.01747 0.98024 1.70197 1.19900 1.27943 1.39839 0.85329 0.77789 0.79482 0.77723 1.20707 1.22072 1.20002 1.22122 0.96542 0.83719 0.93400 1.23880 1.01383 0.83160 0.96734 1.49420 1.66260 1.05559 1.15683 1.19911 0.75418 0.79735 0.89680 1.90634 1.51440 1.74006 1.31764 1.22168 1.04903 0.96491 0.98616 1.23060 0.91670 1.00920 1.01961 1.23055 1.02366 0.90139 1.02463 1.23811 1.00918 0.85929 0.92792 0.96625 0.96316 0.95148 0.94054 0.88197 0.91840 0.90502 0.84126 0.89485 0.84780 0.84975 0.89479 0.89473 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.97 7.73 127.77 0.99 8.96 16 2 N -0.59 -27.70 3.16 -701.59 -2.22 -29.92 16 3 C -0.27 -14.21 9.68 84.03 0.81 -13.39 16 4 H 0.07 3.69 7.86 -2.91 -0.02 3.67 16 5 C -0.04 -2.28 5.11 84.86 0.43 -1.85 16 6 N -0.93 -52.37 10.66 21.65 0.23 -52.14 16 7 Si 0.97 43.21 29.57 68.60 2.03 45.24 16 8 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 9 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 C 0.15 5.77 4.74 45.55 0.22 5.98 16 12 C 0.07 2.66 8.16 83.18 0.68 3.34 16 13 N -0.64 -21.17 3.69 -857.80 -3.16 -24.33 16 14 C 0.56 18.72 7.86 87.66 0.69 19.41 16 15 O -0.60 -24.39 17.03 -3.03 -0.05 -24.44 16 16 C -0.20 -4.72 6.01 -11.54 -0.07 -4.78 16 17 C -0.14 -2.57 10.24 30.62 0.31 -2.26 16 18 C -0.14 -2.78 10.05 30.62 0.31 -2.47 16 19 C 0.09 2.83 7.83 83.27 0.65 3.48 16 20 H 0.02 0.77 7.40 -2.39 -0.02 0.75 16 21 H 0.02 0.93 7.25 -2.39 -0.02 0.91 16 22 H 0.03 1.18 6.00 -2.39 -0.01 1.17 16 23 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 24 H 0.10 3.76 8.07 -2.39 -0.02 3.74 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.08 2.80 7.03 -2.39 -0.02 2.78 16 27 H 0.14 2.74 8.14 -2.38 -0.02 2.72 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 32 H 0.09 2.76 6.45 -2.38 -0.02 2.74 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -63.88 277.74 2.94 -60.94 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.09 Total: 8.24 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.02 Total: 16.42 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.15 Total: -106.39 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -63.88 2.94 -60.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.487 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds