Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34474 * 126.16242 * 2 1 4 4 C 1.30260 * 108.69991 * 180.26640 * 3 2 1 5 5 O 1.33963 * 108.75954 * 359.75563 * 4 3 2 6 6 C 1.34324 * 126.16737 * 179.84947 * 2 1 3 7 7 C 1.50704 * 126.44426 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47081 * 344.70350 * 7 6 2 9 9 C 1.52992 * 109.47325 * 104.70975 * 7 6 2 10 10 N 1.46898 * 109.46738 * 224.70987 * 7 6 2 11 11 C 1.46901 * 111.00443 * 56.04446 * 10 7 6 12 12 C 1.46906 * 110.99820 * 179.97438 * 10 7 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 7 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47238 * 59.99702 * 17 15 13 19 19 H 1.48503 * 109.47230 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47102 * 299.99648 * 17 15 13 21 21 H 1.08996 * 109.46919 * 270.14494 * 1 2 3 22 22 H 1.08994 * 109.47116 * 30.14736 * 1 2 3 23 23 H 1.09003 * 109.46589 * 150.14853 * 1 2 3 24 24 H 1.08005 * 125.61764 * 179.73099 * 4 3 2 25 25 H 1.08998 * 109.47057 * 179.97438 * 9 7 6 26 26 H 1.09007 * 109.46908 * 299.99721 * 9 7 6 27 27 H 1.09000 * 109.47552 * 59.99663 * 9 7 6 28 28 H 1.09002 * 109.47401 * 183.95136 * 11 10 7 29 29 H 1.09001 * 109.46874 * 63.95149 * 11 10 7 30 30 H 1.09004 * 109.46970 * 303.95282 * 11 10 7 31 31 H 1.08997 * 109.46995 * 289.99871 * 12 10 7 32 32 H 1.09001 * 109.46848 * 49.99877 * 12 10 7 33 33 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 -0.0057 5 8 3.5734 -0.6445 -0.0041 6 6 2.2998 -1.0844 0.0028 7 6 1.8494 -2.5226 0.0061 8 1 0.7947 -2.5724 0.2769 9 6 2.0470 -3.1220 -1.3876 10 7 2.6420 -3.2816 0.9825 11 6 2.5511 -2.6772 2.3184 12 6 2.2294 -4.6912 1.0138 13 6 3.2134 -5.4847 1.8340 14 1 4.0605 -4.9911 2.2873 15 6 3.0325 -6.8407 2.0060 16 7 2.0007 -7.4414 1.4545 17 14 4.2520 -7.8241 3.0234 18 1 4.2871 -7.2884 4.4080 19 1 3.8349 -9.2490 3.0549 20 1 5.6031 -7.7167 2.4166 21 1 -0.3633 0.0026 1.0276 22 1 -0.3633 0.8886 -0.5161 23 1 -0.3632 -0.8914 -0.5116 24 1 4.4066 1.3436 -0.0113 25 1 1.7217 -4.1623 -1.3851 26 1 1.4588 -2.5587 -2.1121 27 1 3.1016 -3.0722 -1.6584 28 1 3.2019 -3.2168 3.0064 29 1 1.5218 -2.7326 2.6729 30 1 2.8619 -1.6337 2.2669 31 1 1.2379 -4.7697 1.4598 32 1 2.2028 -5.0845 -0.0024 33 1 1.8736 -8.3955 1.5752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260233156.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = 24.025210 kcal Electronic energy + Delta-G solvation = -15662.501332 eV Core-core repulsion = 13111.170983 eV Total energy + Delta-G solvation = -2551.330349 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.10480 -37.28259 -34.89824 -32.99933 -31.69327 -29.99033 -27.74498 -26.66294 -24.53638 -23.53194 -21.94723 -20.74872 -19.45950 -16.98621 -16.46784 -16.27331 -15.24347 -14.80996 -14.34682 -14.06287 -13.71846 -13.18247 -12.91900 -12.82755 -12.24351 -12.00907 -11.75317 -11.64334 -11.18859 -11.05556 -10.90845 -10.79195 -10.69916 -10.45720 -10.31011 -9.80372 -9.28828 -8.47002 -8.37781 -7.37375 -6.06595 -4.07583 1.73801 2.84188 3.06307 3.31947 3.35883 3.39117 4.31717 4.38400 4.71375 5.00372 5.07862 5.29366 5.47544 5.57282 5.67412 5.73646 5.81124 5.96079 6.05349 6.16398 6.18185 6.27007 6.38950 6.53844 6.62335 6.68515 7.19679 7.24165 7.73326 7.91122 8.01773 8.10464 8.46194 8.99001 9.56396 11.04345 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046327 B = 0.006677 C = 0.006355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.256929 B = 4192.233087 C = 4404.690575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.036 4.036 3 N -0.488 5.488 4 C 0.150 3.850 5 O -0.183 6.183 6 C -0.001 4.001 7 C 0.158 3.842 8 H 0.065 0.935 9 C -0.144 4.144 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.189 3.811 13 C -0.508 4.508 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.244 0.756 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.014 0.986 30 H 0.040 0.960 31 H -0.007 1.007 32 H 0.040 0.960 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 12.134 -3.362 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.156 4.156 3 N -0.218 5.218 4 C -0.077 4.077 5 O -0.067 6.067 6 C -0.056 4.056 7 C 0.049 3.951 8 H 0.082 0.918 9 C -0.201 4.201 10 N -0.258 5.258 11 C -0.108 4.108 12 C 0.064 3.936 13 C -0.547 4.547 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.260 0.740 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.011 0.989 32 H 0.058 0.942 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.686 12.549 -3.528 13.053 hybrid contribution 0.160 -1.131 0.861 1.431 sum -0.526 11.417 -2.667 11.737 Atomic orbital electron populations 1.20068 0.86897 1.02939 1.02619 1.21425 0.97800 0.87641 1.08753 1.70267 1.01479 1.31838 1.18211 1.27874 0.97315 0.80100 1.02396 1.84535 1.30126 1.23575 1.68494 1.23442 0.80571 0.97481 1.04096 1.20173 0.95306 0.83719 0.95912 0.91791 1.21902 1.02798 1.01782 0.93625 1.62278 1.53394 1.04802 1.05284 1.22191 0.99387 0.97629 0.91589 1.19873 0.94779 0.80786 0.98127 1.21096 1.09819 0.92555 1.31213 0.91898 1.24970 0.95702 0.97727 0.96114 1.69940 1.28711 1.10514 1.44677 0.86543 0.81439 0.78761 0.80575 1.20295 1.21319 1.20132 0.91112 0.90949 0.90832 0.74025 0.90292 0.92885 0.91593 0.90427 0.96752 0.94146 0.98940 0.94169 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.00 36.01 0.36 -0.49 16 2 C -0.04 -0.57 7.11 -82.81 -0.59 -1.16 16 3 N -0.49 -7.61 11.29 -11.18 -0.13 -7.73 16 4 C 0.15 2.03 13.23 52.10 0.69 2.72 16 5 O -0.18 -3.08 10.59 5.37 0.06 -3.02 16 6 C 0.00 -0.02 4.50 -35.69 -0.16 -0.18 16 7 C 0.16 2.87 2.38 -68.87 -0.16 2.71 16 8 H 0.06 1.12 7.17 -51.93 -0.37 0.74 16 9 C -0.14 -2.42 8.97 37.15 0.33 -2.09 16 10 N -0.53 -11.53 4.62 -237.73 -1.10 -12.63 16 11 C 0.04 0.82 9.09 60.07 0.55 1.37 16 12 C 0.19 4.78 4.54 -4.97 -0.02 4.76 16 13 C -0.51 -14.11 8.51 -34.44 -0.29 -14.40 16 14 H 0.06 1.74 7.10 -52.48 -0.37 1.37 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 24 H 0.24 1.98 8.06 -52.48 -0.42 1.56 16 25 H 0.08 1.42 6.20 -51.93 -0.32 1.09 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.65 6.86 -51.93 -0.36 1.30 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.76 6.69 -51.93 -0.35 0.41 16 31 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 32 H 0.04 1.06 5.83 -51.93 -0.30 0.76 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -31.21 276.92 -5.23 -36.44 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.55 Total: -2.92 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 0.60 Total: -5.29 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.49 Total: -45.84 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.06 Total: -3.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.21 -5.23 -36.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233156.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.462 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds