Wall clock time and date at job start Mon Mar 30 2020 02:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34474 * 126.16242 * 2 1 4 4 C 1.30260 * 108.69991 * 180.26640 * 3 2 1 5 5 O 1.33963 * 108.75954 * 359.75563 * 4 3 2 6 6 C 1.34324 * 126.16737 * 179.84947 * 2 1 3 7 7 C 1.50704 * 126.44426 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47081 * 344.70350 * 7 6 2 9 9 C 1.52992 * 109.47325 * 104.70975 * 7 6 2 10 10 N 1.46898 * 109.46738 * 224.70987 * 7 6 2 11 11 C 1.46901 * 111.00443 * 56.04446 * 10 7 6 12 12 C 1.46906 * 110.99820 * 179.97438 * 10 7 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 7 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47238 * 59.99702 * 17 15 13 19 19 H 1.48503 * 109.47230 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47102 * 299.99648 * 17 15 13 21 21 H 1.08996 * 109.46919 * 270.14494 * 1 2 3 22 22 H 1.08994 * 109.47116 * 30.14736 * 1 2 3 23 23 H 1.09003 * 109.46589 * 150.14853 * 1 2 3 24 24 H 1.08005 * 125.61764 * 179.73099 * 4 3 2 25 25 H 1.08998 * 109.47057 * 179.97438 * 9 7 6 26 26 H 1.09007 * 109.46908 * 299.99721 * 9 7 6 27 27 H 1.09000 * 109.47552 * 59.99663 * 9 7 6 28 28 H 1.09002 * 109.47401 * 183.95136 * 11 10 7 29 29 H 1.09001 * 109.46874 * 63.95149 * 11 10 7 30 30 H 1.09004 * 109.46970 * 303.95282 * 11 10 7 31 31 H 1.08997 * 109.46995 * 289.99871 * 12 10 7 32 32 H 1.09001 * 109.46848 * 49.99877 * 12 10 7 33 33 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 -0.0057 5 8 3.5734 -0.6445 -0.0041 6 6 2.2998 -1.0844 0.0028 7 6 1.8494 -2.5226 0.0061 8 1 0.7947 -2.5724 0.2769 9 6 2.0470 -3.1220 -1.3876 10 7 2.6420 -3.2816 0.9825 11 6 2.5511 -2.6772 2.3184 12 6 2.2294 -4.6912 1.0138 13 6 3.2134 -5.4847 1.8340 14 1 4.0605 -4.9911 2.2873 15 6 3.0325 -6.8407 2.0060 16 7 2.0007 -7.4414 1.4545 17 14 4.2520 -7.8241 3.0234 18 1 4.2871 -7.2884 4.4080 19 1 3.8349 -9.2490 3.0549 20 1 5.6031 -7.7167 2.4166 21 1 -0.3633 0.0026 1.0276 22 1 -0.3633 0.8886 -0.5161 23 1 -0.3632 -0.8914 -0.5116 24 1 4.4066 1.3436 -0.0113 25 1 1.7217 -4.1623 -1.3851 26 1 1.4588 -2.5587 -2.1121 27 1 3.1016 -3.0722 -1.6584 28 1 3.2019 -3.2168 3.0064 29 1 1.5218 -2.7326 2.6729 30 1 2.8619 -1.6337 2.2669 31 1 1.2379 -4.7697 1.4598 32 1 2.2028 -5.0845 -0.0024 33 1 1.8736 -8.3955 1.5752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260233156.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:30 Heat of formation + Delta-G solvation = 0.683456 kcal Electronic energy + Delta-G solvation = -15663.513506 eV Core-core repulsion = 13111.170983 eV Total energy + Delta-G solvation = -2552.342524 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.28737 -38.91428 -36.07613 -34.95376 -33.22712 -31.27113 -29.52275 -28.01875 -26.28953 -24.97571 -23.40887 -22.09291 -20.93125 -18.69884 -17.84008 -17.66234 -16.83304 -16.54212 -15.88901 -15.47676 -15.31972 -14.56467 -14.18079 -14.13925 -13.87828 -13.43636 -13.24434 -13.00865 -12.92021 -12.72624 -12.63413 -12.38244 -12.23919 -11.94273 -11.88551 -11.42648 -11.30708 -10.58553 -9.58824 -9.12392 -8.20269 -6.29220 0.55216 1.41868 1.44249 1.52236 1.70864 1.92473 2.40534 3.10787 3.14991 3.35325 3.74888 3.95331 4.13191 4.19285 4.36832 4.58378 4.62898 4.71155 4.72850 4.78099 4.89495 4.97921 5.04034 5.14086 5.19921 5.22080 5.31003 5.48793 5.64332 6.03547 6.24052 6.53507 6.79017 6.84918 7.39615 8.90448 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046327 B = 0.006677 C = 0.006355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.256929 B = 4192.233087 C = 4404.690575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.029 4.029 3 N -0.514 5.514 4 C 0.171 3.829 5 O -0.204 6.204 6 C -0.032 4.032 7 C 0.159 3.841 8 H 0.070 0.930 9 C -0.137 4.137 10 N -0.543 5.543 11 C 0.049 3.951 12 C 0.204 3.796 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.270 1.270 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.292 0.708 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.056 0.944 31 H -0.033 1.033 32 H 0.026 0.974 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 13.356 -3.224 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.148 4.148 3 N -0.243 5.243 4 C -0.054 4.054 5 O -0.090 6.090 6 C -0.085 4.085 7 C 0.050 3.950 8 H 0.088 0.912 9 C -0.194 4.194 10 N -0.268 5.268 11 C -0.099 4.099 12 C 0.079 3.921 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.195 1.195 21 H 0.096 0.904 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.307 0.693 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.075 0.925 31 H -0.015 1.015 32 H 0.044 0.956 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.065 13.793 -3.393 14.205 hybrid contribution -0.025 -1.376 0.780 1.582 sum -0.090 12.417 -2.612 12.689 Atomic orbital electron populations 1.20206 0.85125 1.04062 1.03402 1.21850 0.99037 0.87240 1.06678 1.70341 1.02322 1.31820 1.19842 1.29049 0.98295 0.79303 0.98797 1.84519 1.30187 1.25136 1.69132 1.23088 0.81123 0.96868 1.07465 1.20150 0.95176 0.84431 0.95198 0.91243 1.21838 1.02554 1.01074 0.93950 1.62153 1.54501 1.03465 1.06644 1.22085 0.99095 0.98044 0.90688 1.19522 0.92983 0.83081 0.96536 1.21415 1.10146 0.93313 1.31641 0.92302 1.25824 0.97462 0.98794 0.97158 1.70053 1.30335 1.10902 1.45841 0.85489 0.79077 0.77256 0.79115 1.19458 1.20702 1.19510 0.90423 0.89636 0.89934 0.69334 0.92121 0.89923 0.92624 0.92010 0.96629 0.92542 1.01506 0.95615 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.00 71.24 0.71 -0.92 16 2 C -0.03 -0.84 7.11 41.26 0.29 -0.55 16 3 N -0.51 -14.71 11.29 -304.07 -3.43 -18.15 16 4 C 0.17 4.16 13.23 130.48 1.73 5.89 16 5 O -0.20 -6.50 10.59 -3.71 -0.04 -6.54 16 6 C -0.03 -1.04 4.50 24.79 0.11 -0.93 16 7 C 0.16 5.73 2.38 44.17 0.11 5.84 16 8 H 0.07 2.41 7.17 -2.39 -0.02 2.39 16 9 C -0.14 -4.60 8.97 71.98 0.65 -3.95 16 10 N -0.54 -23.73 4.62 -906.04 -4.18 -27.91 16 11 C 0.05 1.99 9.09 127.69 1.16 3.15 16 12 C 0.20 10.64 4.54 85.55 0.39 11.03 16 13 C -0.53 -29.70 8.51 25.60 0.22 -29.48 16 14 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 17 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.08 1.73 7.45 -2.39 -0.02 1.71 16 24 H 0.29 3.50 8.06 -2.91 -0.02 3.48 16 25 H 0.06 2.23 6.20 -2.39 -0.01 2.22 16 26 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.65 6.86 -2.39 -0.02 2.64 16 29 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 2.08 6.69 -2.38 -0.02 2.06 16 31 H -0.03 -1.84 8.12 -2.39 -0.02 -1.86 16 32 H 0.03 1.41 5.83 -2.39 -0.01 1.40 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -66.76 276.92 1.57 -65.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.09 Total: 5.21 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.82 Total: -9.12 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -7.33 Total: -100.78 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.04 Total: -6.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.76 1.57 -65.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233156.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.869 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds