Wall clock time and date at job start Mon Mar 30 2020 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34481 * 126.16481 * 2 1 4 4 C 1.30258 * 108.69858 * 179.97438 * 3 2 1 5 5 O 1.33964 * 108.76150 * 359.73431 * 4 3 2 6 6 C 1.34327 * 126.16823 * 180.02562 * 2 1 3 7 7 C 1.50706 * 126.43931 * 359.97438 * 6 2 1 8 8 H 1.08996 * 109.46822 * 15.00859 * 7 6 2 9 9 C 1.52997 * 109.47238 * 255.00077 * 7 6 2 10 10 N 1.46902 * 109.46577 * 135.00375 * 7 6 2 11 11 C 1.46904 * 110.99963 * 303.95159 * 10 7 6 12 12 C 1.46905 * 110.99800 * 180.02562 * 10 7 6 13 13 C 1.50700 * 109.47326 * 189.99540 * 12 10 7 14 14 H 1.07997 * 119.99600 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99823 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47307 * 90.00098 * 17 15 13 19 19 H 1.48502 * 109.47128 * 210.00148 * 17 15 13 20 20 H 1.48504 * 109.47079 * 330.00242 * 17 15 13 21 21 H 1.08998 * 109.47521 * 270.00459 * 1 2 3 22 22 H 1.09003 * 109.47178 * 30.00047 * 1 2 3 23 23 H 1.08997 * 109.47059 * 149.99984 * 1 2 3 24 24 H 1.08001 * 125.61552 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 9 7 6 26 26 H 1.09001 * 109.46832 * 60.00314 * 9 7 6 27 27 H 1.09004 * 109.47261 * 300.00295 * 9 7 6 28 28 H 1.08998 * 109.46991 * 60.00787 * 11 10 7 29 29 H 1.08998 * 109.46942 * 180.02562 * 11 10 7 30 30 H 1.08998 * 109.47155 * 300.00314 * 11 10 7 31 31 H 1.08997 * 109.47089 * 310.00066 * 12 10 7 32 32 H 1.09006 * 109.47115 * 69.99884 * 12 10 7 33 33 H 0.97006 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6446 0.0068 6 6 2.2997 -1.0844 -0.0005 7 6 1.8493 -2.5226 -0.0006 8 1 0.7934 -2.5725 -0.2663 9 6 2.0536 -3.1211 1.3925 10 7 2.6372 -3.2823 -0.9803 11 6 2.5398 -2.6788 -2.3161 12 6 2.2244 -4.6919 -1.0086 13 6 3.2044 -5.4860 -1.8332 14 1 4.0497 -4.9929 -2.2901 15 6 3.0225 -6.8420 -2.0033 16 7 1.9935 -7.4424 -1.4465 17 14 4.2378 -7.8264 -3.0248 18 1 5.3242 -8.3338 -2.1487 19 1 3.5375 -8.9722 -3.6590 20 1 4.8178 -6.9559 -4.0789 21 1 -0.3634 0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4066 1.3435 0.0011 25 1 1.7282 -4.1614 1.3923 26 1 1.4689 -2.5573 2.1195 27 1 3.1095 -3.0711 1.6582 28 1 2.9170 -1.6567 -2.2814 29 1 3.1319 -3.2611 -3.0220 30 1 1.4978 -2.6709 -2.6361 31 1 2.2026 -5.0846 0.0079 32 1 1.2307 -4.7706 -1.4499 33 1 1.8653 -8.3964 -1.5665 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260233172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:32 Heat of formation + Delta-G solvation = 24.015533 kcal Electronic energy + Delta-G solvation = -15663.022710 eV Core-core repulsion = 13111.691941 eV Total energy + Delta-G solvation = -2551.330769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.10232 -37.28347 -34.89723 -33.00097 -31.68821 -30.00129 -27.73376 -26.66507 -24.53937 -23.53908 -21.94546 -20.74729 -19.45949 -16.99375 -16.45855 -16.27519 -15.24436 -14.81153 -14.35104 -14.07179 -13.71407 -13.17576 -12.92189 -12.84057 -12.24429 -11.99937 -11.75642 -11.65852 -11.17577 -11.05755 -10.91411 -10.78204 -10.67198 -10.45680 -10.30947 -9.80952 -9.28135 -8.47833 -8.38284 -7.37274 -6.06917 -4.07873 1.74079 2.84391 3.06444 3.30407 3.36387 3.40078 4.31751 4.38331 4.71701 5.00477 5.07439 5.29104 5.44104 5.57364 5.67500 5.73974 5.82862 5.97362 6.06531 6.16906 6.17252 6.26767 6.38502 6.54172 6.62294 6.69168 7.19728 7.24145 7.73427 7.91190 8.01727 8.10325 8.46012 8.99076 9.56224 11.04013 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046304 B = 0.006677 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.553360 B = 4192.366904 C = 4403.192746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.036 4.036 3 N -0.488 5.488 4 C 0.150 3.850 5 O -0.183 6.183 6 C -0.001 4.001 7 C 0.158 3.842 8 H 0.065 0.935 9 C -0.143 4.143 10 N -0.532 5.532 11 C 0.040 3.960 12 C 0.188 3.812 13 C -0.508 4.508 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.244 0.756 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.013 0.987 31 H 0.040 0.960 32 H -0.007 1.007 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 12.138 3.316 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.156 4.156 3 N -0.218 5.218 4 C -0.077 4.077 5 O -0.067 6.067 6 C -0.056 4.056 7 C 0.049 3.951 8 H 0.082 0.918 9 C -0.200 4.200 10 N -0.258 5.258 11 C -0.109 4.109 12 C 0.064 3.936 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.260 0.740 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.663 12.558 3.481 13.048 hybrid contribution 0.153 -1.140 -0.825 1.416 sum -0.510 11.418 2.655 11.733 Atomic orbital electron populations 1.20071 0.86899 1.03007 1.02519 1.21422 0.97797 0.87647 1.08753 1.70271 1.01475 1.31833 1.18215 1.27872 0.97317 0.80102 1.02381 1.84534 1.30125 1.23577 1.68508 1.23436 0.80576 0.97482 1.04099 1.20186 0.95292 0.83730 0.95890 0.91773 1.21894 1.02775 1.01777 0.93597 1.62271 1.53616 1.04792 1.05112 1.22201 0.98978 0.97980 0.91734 1.19876 0.94781 0.80810 0.98151 1.21133 1.10017 0.92540 1.30924 0.91829 1.24968 0.95686 0.97740 0.96132 1.69947 1.28795 1.10445 1.44639 0.86487 0.81009 0.79543 0.80317 1.20586 1.21293 1.19875 0.91058 0.90984 0.90885 0.74025 0.90298 0.92882 0.91607 0.94089 0.90270 0.96885 0.94167 0.98942 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.17 36.01 0.37 -0.48 16 2 C -0.04 -0.57 7.11 -82.81 -0.59 -1.16 16 3 N -0.49 -7.61 11.29 -11.18 -0.13 -7.74 16 4 C 0.15 2.04 13.23 52.10 0.69 2.73 16 5 O -0.18 -3.08 10.59 5.38 0.06 -3.02 16 6 C 0.00 -0.02 4.56 -35.69 -0.16 -0.19 16 7 C 0.16 2.87 2.46 -68.86 -0.17 2.70 16 8 H 0.06 1.12 6.84 -51.93 -0.36 0.76 16 9 C -0.14 -2.41 8.97 37.16 0.33 -2.08 16 10 N -0.53 -11.53 4.62 -237.72 -1.10 -12.63 16 11 C 0.04 0.80 9.07 60.07 0.54 1.35 16 12 C 0.19 4.76 4.54 -4.97 -0.02 4.74 16 13 C -0.51 -14.07 8.46 -34.44 -0.29 -14.37 16 14 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.88 7.03 -51.93 -0.36 0.51 16 24 H 0.24 1.98 8.06 -52.49 -0.42 1.56 16 25 H 0.08 1.42 6.20 -51.93 -0.32 1.10 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.77 6.83 -51.93 -0.35 0.42 16 29 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 1.06 5.83 -51.93 -0.30 0.75 16 32 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -31.19 276.47 -5.20 -36.39 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.52 Total: -2.87 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 0.60 Total: -5.28 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.49 Total: -45.82 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.06 Total: -3.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.19 -5.20 -36.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.410 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds