Wall clock time and date at job start Mon Mar 30 2020 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34481 * 126.16481 * 2 1 4 4 C 1.30258 * 108.69858 * 179.97438 * 3 2 1 5 5 O 1.33964 * 108.76150 * 359.73431 * 4 3 2 6 6 C 1.34327 * 126.16823 * 180.02562 * 2 1 3 7 7 C 1.50706 * 126.43931 * 359.97438 * 6 2 1 8 8 H 1.08996 * 109.46822 * 15.00859 * 7 6 2 9 9 C 1.52997 * 109.47238 * 255.00077 * 7 6 2 10 10 N 1.46902 * 109.46577 * 135.00375 * 7 6 2 11 11 C 1.46904 * 110.99963 * 303.95159 * 10 7 6 12 12 C 1.46905 * 110.99800 * 180.02562 * 10 7 6 13 13 C 1.50700 * 109.47326 * 189.99540 * 12 10 7 14 14 H 1.07997 * 119.99600 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99823 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47307 * 90.00098 * 17 15 13 19 19 H 1.48502 * 109.47128 * 210.00148 * 17 15 13 20 20 H 1.48504 * 109.47079 * 330.00242 * 17 15 13 21 21 H 1.08998 * 109.47521 * 270.00459 * 1 2 3 22 22 H 1.09003 * 109.47178 * 30.00047 * 1 2 3 23 23 H 1.08997 * 109.47059 * 149.99984 * 1 2 3 24 24 H 1.08001 * 125.61552 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 9 7 6 26 26 H 1.09001 * 109.46832 * 60.00314 * 9 7 6 27 27 H 1.09004 * 109.47261 * 300.00295 * 9 7 6 28 28 H 1.08998 * 109.46991 * 60.00787 * 11 10 7 29 29 H 1.08998 * 109.46942 * 180.02562 * 11 10 7 30 30 H 1.08998 * 109.47155 * 300.00314 * 11 10 7 31 31 H 1.08997 * 109.47089 * 310.00066 * 12 10 7 32 32 H 1.09006 * 109.47115 * 69.99884 * 12 10 7 33 33 H 0.97006 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6446 0.0068 6 6 2.2997 -1.0844 -0.0005 7 6 1.8493 -2.5226 -0.0006 8 1 0.7934 -2.5725 -0.2663 9 6 2.0536 -3.1211 1.3925 10 7 2.6372 -3.2823 -0.9803 11 6 2.5398 -2.6788 -2.3161 12 6 2.2244 -4.6919 -1.0086 13 6 3.2044 -5.4860 -1.8332 14 1 4.0497 -4.9929 -2.2901 15 6 3.0225 -6.8420 -2.0033 16 7 1.9935 -7.4424 -1.4465 17 14 4.2378 -7.8264 -3.0248 18 1 5.3242 -8.3338 -2.1487 19 1 3.5375 -8.9722 -3.6590 20 1 4.8178 -6.9559 -4.0789 21 1 -0.3634 0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4066 1.3435 0.0011 25 1 1.7282 -4.1614 1.3923 26 1 1.4689 -2.5573 2.1195 27 1 3.1095 -3.0711 1.6582 28 1 2.9170 -1.6567 -2.2814 29 1 3.1319 -3.2611 -3.0220 30 1 1.4978 -2.6709 -2.6361 31 1 2.2026 -5.0846 0.0079 32 1 1.2307 -4.7706 -1.4499 33 1 1.8653 -8.3964 -1.5665 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260233172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:32 Heat of formation + Delta-G solvation = 0.671372 kcal Electronic energy + Delta-G solvation = -15664.034989 eV Core-core repulsion = 13111.691941 eV Total energy + Delta-G solvation = -2552.343048 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.28480 -38.91473 -36.07545 -34.95551 -33.22112 -31.28265 -29.51556 -28.01675 -26.29218 -24.98327 -23.40641 -22.09337 -20.92939 -18.70222 -17.84725 -17.64996 -16.83861 -16.53964 -15.89266 -15.47331 -15.33065 -14.55045 -14.17512 -14.15397 -13.89695 -13.43976 -13.22597 -13.04442 -12.92220 -12.71024 -12.63561 -12.36040 -12.23174 -11.94868 -11.87338 -11.43056 -11.29911 -10.58941 -9.59666 -9.12000 -8.20457 -6.29343 0.55548 1.41856 1.42732 1.53591 1.71119 1.92649 2.40402 3.10751 3.15051 3.35243 3.75102 3.94453 4.10853 4.20158 4.37459 4.57755 4.62466 4.70195 4.74018 4.80778 4.89367 4.97791 5.03620 5.14544 5.19958 5.22025 5.30830 5.48906 5.64436 6.03581 6.24153 6.53472 6.79108 6.85087 7.39579 8.90412 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046304 B = 0.006677 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.553360 B = 4192.366904 C = 4403.192746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.029 4.029 3 N -0.513 5.513 4 C 0.172 3.828 5 O -0.204 6.204 6 C -0.032 4.032 7 C 0.159 3.841 8 H 0.070 0.930 9 C -0.136 4.136 10 N -0.543 5.543 11 C 0.048 3.952 12 C 0.204 3.796 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.292 0.708 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.026 0.974 32 H -0.033 1.033 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 13.374 3.218 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 N -0.243 5.243 4 C -0.054 4.054 5 O -0.090 6.090 6 C -0.086 4.086 7 C 0.050 3.950 8 H 0.088 0.912 9 C -0.194 4.194 10 N -0.268 5.268 11 C -0.100 4.100 12 C 0.078 3.922 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.192 1.192 21 H 0.106 0.894 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.307 0.693 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.044 0.956 32 H -0.015 1.015 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.047 13.815 3.386 14.224 hybrid contribution -0.031 -1.390 -0.756 1.583 sum -0.078 12.425 2.630 12.701 Atomic orbital electron populations 1.20201 0.85126 1.03578 1.03799 1.21847 0.99034 0.87252 1.06678 1.70344 1.02315 1.31804 1.19855 1.29048 0.98297 0.79306 0.98782 1.84518 1.30183 1.25136 1.69148 1.23079 0.81128 0.96868 1.07484 1.20165 0.95176 0.84443 0.95167 0.91225 1.21829 1.02523 1.01064 0.93934 1.62150 1.54713 1.03458 1.06479 1.22092 0.98896 0.98224 0.90785 1.19524 0.92986 0.83100 0.96557 1.21440 1.10317 0.93288 1.31346 0.92293 1.25820 0.97427 0.98809 0.97196 1.70057 1.30409 1.10874 1.45807 0.85434 0.78699 0.77986 0.78803 1.19914 1.20678 1.19157 0.89365 0.90017 0.90689 0.69333 0.92131 0.89940 0.92628 0.92559 0.91968 0.96578 0.95621 1.01498 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.17 71.24 0.72 -0.89 16 2 C -0.03 -0.85 7.11 41.26 0.29 -0.55 16 3 N -0.51 -14.71 11.29 -304.07 -3.43 -18.15 16 4 C 0.17 4.17 13.23 130.48 1.73 5.89 16 5 O -0.20 -6.51 10.59 -3.67 -0.04 -6.55 16 6 C -0.03 -1.05 4.56 24.79 0.11 -0.93 16 7 C 0.16 5.74 2.46 44.17 0.11 5.85 16 8 H 0.07 2.42 6.84 -2.39 -0.02 2.40 16 9 C -0.14 -4.58 8.97 71.98 0.65 -3.94 16 10 N -0.54 -23.75 4.62 -906.01 -4.18 -27.93 16 11 C 0.05 1.96 9.07 127.69 1.16 3.12 16 12 C 0.20 10.61 4.54 85.56 0.39 11.00 16 13 C -0.53 -29.61 8.46 25.60 0.22 -29.39 16 14 H 0.06 3.30 7.12 -2.91 -0.02 3.28 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -54.98 13.29 21.44 0.28 -54.70 16 17 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 1.69 7.03 -2.39 -0.02 1.67 16 24 H 0.29 3.50 8.06 -2.91 -0.02 3.48 16 25 H 0.06 2.23 6.20 -2.39 -0.01 2.22 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.06 2.08 6.83 -2.39 -0.02 2.07 16 29 H 0.06 2.69 6.76 -2.39 -0.02 2.67 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.03 1.41 5.83 -2.39 -0.01 1.39 16 32 H -0.03 -1.83 8.12 -2.38 -0.02 -1.85 16 33 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -66.75 276.47 1.59 -65.16 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.10 Total: 5.16 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.84 Total: -9.05 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -7.33 Total: -100.77 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.04 Total: -6.55 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.75 1.59 -65.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.833 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds