Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.50705 * 109.47204 * 119.99945 * 2 1 3 5 5 C 1.35446 * 126.77697 * 120.00410 * 4 2 1 6 6 C 1.41373 * 103.98863 * 179.97438 * 5 4 2 7 7 C 1.50701 * 126.80623 * 179.73789 * 6 5 4 8 8 H 1.08997 * 109.46921 * 155.00108 * 7 6 5 9 9 C 1.50693 * 109.46974 * 34.99941 * 7 6 5 10 10 H 1.08005 * 119.99779 * 269.37056 * 9 7 6 11 11 C 1.37873 * 120.00620 * 89.37157 * 9 7 6 12 12 N 1.31522 * 119.99487 * 6.50176 * 11 9 7 13 13 Si 1.86796 * 120.00655 * 186.49870 * 11 9 7 14 14 H 1.48504 * 109.46777 * 89.99947 * 13 11 9 15 15 H 1.48499 * 109.47483 * 209.99790 * 13 11 9 16 16 H 1.48498 * 109.47129 * 330.00442 * 13 11 9 17 17 C 1.52998 * 109.46896 * 274.99777 * 7 6 5 18 18 N 1.46904 * 109.46900 * 185.29388 * 17 7 6 19 19 N 1.30182 * 106.39347 * 359.97438 * 6 5 4 20 20 O 1.20920 * 111.60618 * 0.02562 * 19 6 5 21 21 H 1.09002 * 109.47157 * 299.99832 * 1 2 3 22 22 H 1.08999 * 109.46969 * 60.00069 * 1 2 3 23 23 H 1.09001 * 109.46778 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47627 * 240.00418 * 2 1 3 25 25 H 1.08999 * 109.47172 * 299.99806 * 3 2 1 26 26 H 1.09002 * 109.46998 * 60.00070 * 3 2 1 27 27 H 1.09001 * 109.47679 * 179.97438 * 3 2 1 28 28 H 1.08004 * 128.00763 * 359.94232 * 5 4 2 29 29 H 0.96996 * 119.99837 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.47622 * 305.29584 * 17 7 6 31 31 H 1.09008 * 109.47121 * 65.29748 * 17 7 6 32 32 H 1.00896 * 111.00334 * 56.04935 * 18 17 7 33 33 H 1.00905 * 110.99922 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8141 -1.8159 1.2663 6 6 2.9910 -2.0649 2.6466 7 6 3.7795 -3.1891 3.2675 8 1 4.1061 -2.8959 4.2652 9 6 4.9836 -3.4898 2.4128 10 1 4.9167 -4.2260 1.6254 11 6 6.1709 -2.8253 2.6360 12 7 6.2915 -2.0246 3.6724 13 14 7.6081 -3.0621 1.4666 14 1 7.5342 -2.0519 0.3806 15 1 8.8833 -2.8977 2.2096 16 1 7.5493 -4.4250 0.8797 17 6 2.8989 -4.4364 3.3651 18 7 3.6241 -5.4927 4.0839 19 7 2.3334 -1.1336 3.2751 20 8 1.7944 -0.3724 2.5056 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4426 0.0005 28 1 3.2103 -2.3775 0.4331 29 1 7.1265 -1.5568 3.8292 30 1 1.9830 -4.1934 3.9036 31 1 2.6496 -4.7845 2.3626 32 1 3.9229 -5.1720 4.9927 33 1 3.0633 -6.3279 4.1613 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = 39.609065 kcal Electronic energy + Delta-G solvation = -15605.803879 eV Core-core repulsion = 13055.149296 eV Total energy + Delta-G solvation = -2550.654583 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.84588 -35.70845 -35.62750 -32.61222 -32.11441 -29.77082 -28.20049 -27.07883 -24.32609 -22.64975 -22.32416 -20.72111 -18.42002 -16.65989 -16.50071 -16.12125 -14.94195 -14.78242 -14.49930 -13.91338 -13.61418 -13.07600 -12.76949 -12.66602 -12.13940 -12.12340 -11.66213 -11.15453 -11.08847 -10.95517 -10.80444 -10.71630 -10.57968 -10.16332 -9.82052 -9.14121 -8.73536 -8.45284 -8.36641 -7.72412 -6.01641 -4.02952 2.40368 3.31669 3.39190 3.42536 3.49014 3.95458 4.45222 4.89737 5.12099 5.15606 5.22064 5.51965 5.62115 5.67488 5.71196 5.89114 5.97049 6.00214 6.22392 6.24196 6.32041 6.34631 6.38851 6.52480 6.73022 6.86049 7.30748 7.64908 7.91878 8.00960 8.27504 8.36737 9.02643 9.42137 9.59887 11.08340 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.009596 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.274953 B = 2917.278474 C = 3587.188291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.005 4.005 3 C -0.148 4.148 4 C -0.068 4.068 5 C -0.202 4.202 6 C 0.075 3.925 7 C 0.101 3.899 8 H 0.070 0.930 9 C -0.484 4.484 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.892 3.108 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.085 3.915 18 N -0.830 5.830 19 N -0.394 5.394 20 O 0.076 5.924 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.160 0.840 29 H 0.261 0.739 30 H -0.004 1.004 31 H 0.057 0.943 32 H 0.337 0.663 33 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 2.340 -6.486 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 C -0.205 4.205 4 C -0.132 4.132 5 C -0.224 4.224 6 C -0.084 4.084 7 C 0.081 3.919 8 H 0.088 0.912 9 C -0.522 4.522 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.526 5.526 13 Si 0.719 3.281 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.196 1.196 17 C -0.046 4.046 18 N -0.358 5.358 19 N -0.103 5.103 20 O 0.015 5.985 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.177 0.823 29 H 0.070 0.930 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.717 2.826 -5.710 10.797 hybrid contribution 0.505 -0.262 -0.653 0.866 sum -8.212 2.563 -6.363 10.700 Atomic orbital electron populations 1.21852 0.94074 1.02259 1.02167 1.19573 0.95868 0.95680 0.91356 1.21857 1.01784 0.94789 1.02094 1.24186 1.02835 0.98451 0.87736 1.22356 1.02491 0.98850 0.98657 1.24752 0.94992 0.97609 0.91064 1.17410 0.90929 0.84805 0.98749 0.91171 1.20723 0.93554 1.21374 1.16558 0.92133 1.25006 0.98615 0.95114 0.95010 1.69955 1.26379 1.29434 1.26820 0.86594 0.81895 0.78536 0.81032 1.20837 1.21343 1.19640 1.21714 0.92877 0.93141 0.96900 1.58462 1.45689 1.06809 1.24846 1.73780 1.14260 1.05436 1.16852 1.84698 1.56510 1.44448 1.12869 0.92070 0.92081 0.92366 0.88767 0.92085 0.92058 0.92140 0.82263 0.92955 0.98593 0.92487 0.85077 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.18 37.16 0.34 -1.31 16 2 C -0.01 -0.07 3.34 -91.77 -0.31 -0.38 16 3 C -0.15 -1.83 9.18 37.16 0.34 -1.49 16 4 C -0.07 -1.27 6.00 -35.30 -0.21 -1.49 16 5 C -0.20 -4.31 10.36 -39.39 -0.41 -4.72 16 6 C 0.08 1.84 6.21 -82.10 -0.51 1.33 16 7 C 0.10 2.56 2.46 -92.93 -0.23 2.33 16 8 H 0.07 2.02 7.39 -51.93 -0.38 1.63 16 9 C -0.48 -13.09 7.49 -34.44 -0.26 -13.35 16 10 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 11 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 12 N -0.89 -26.27 12.85 55.43 0.71 -25.56 16 13 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 17 C 0.09 1.84 6.14 -3.82 -0.02 1.81 16 18 N -0.83 -16.36 9.35 -10.37 -0.10 -16.46 16 19 N -0.39 -9.57 12.07 33.42 0.40 -9.16 16 20 O 0.08 1.61 11.20 17.17 0.19 1.80 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.16 3.17 8.06 -52.48 -0.42 2.74 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.34 6.55 8.99 -39.29 -0.35 6.20 16 33 H 0.32 5.16 9.08 -39.29 -0.36 4.81 16 LS Contribution 285.03 15.07 4.30 4.30 Total: -1.00 -31.08 285.03 -5.74 -36.82 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.87 Total: 7.25 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.36 Total: -15.53 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 1.02 Total: -51.18 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.80 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.08 -5.74 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.430 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds