Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.50705 * 109.47204 * 119.99945 * 2 1 3 5 5 C 1.35446 * 126.77697 * 120.00410 * 4 2 1 6 6 C 1.41373 * 103.98863 * 179.97438 * 5 4 2 7 7 C 1.50701 * 126.80623 * 179.73789 * 6 5 4 8 8 H 1.08997 * 109.46921 * 155.00108 * 7 6 5 9 9 C 1.50693 * 109.46974 * 34.99941 * 7 6 5 10 10 H 1.08005 * 119.99779 * 269.37056 * 9 7 6 11 11 C 1.37873 * 120.00620 * 89.37157 * 9 7 6 12 12 N 1.31522 * 119.99487 * 6.50176 * 11 9 7 13 13 Si 1.86796 * 120.00655 * 186.49870 * 11 9 7 14 14 H 1.48504 * 109.46777 * 89.99947 * 13 11 9 15 15 H 1.48499 * 109.47483 * 209.99790 * 13 11 9 16 16 H 1.48498 * 109.47129 * 330.00442 * 13 11 9 17 17 C 1.52998 * 109.46896 * 274.99777 * 7 6 5 18 18 N 1.46904 * 109.46900 * 185.29388 * 17 7 6 19 19 N 1.30182 * 106.39347 * 359.97438 * 6 5 4 20 20 O 1.20920 * 111.60618 * 0.02562 * 19 6 5 21 21 H 1.09002 * 109.47157 * 299.99832 * 1 2 3 22 22 H 1.08999 * 109.46969 * 60.00069 * 1 2 3 23 23 H 1.09001 * 109.46778 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47627 * 240.00418 * 2 1 3 25 25 H 1.08999 * 109.47172 * 299.99806 * 3 2 1 26 26 H 1.09002 * 109.46998 * 60.00070 * 3 2 1 27 27 H 1.09001 * 109.47679 * 179.97438 * 3 2 1 28 28 H 1.08004 * 128.00763 * 359.94232 * 5 4 2 29 29 H 0.96996 * 119.99837 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.47622 * 305.29584 * 17 7 6 31 31 H 1.09008 * 109.47121 * 65.29748 * 17 7 6 32 32 H 1.00896 * 111.00334 * 56.04935 * 18 17 7 33 33 H 1.00905 * 110.99922 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8141 -1.8159 1.2663 6 6 2.9910 -2.0649 2.6466 7 6 3.7795 -3.1891 3.2675 8 1 4.1061 -2.8959 4.2652 9 6 4.9836 -3.4898 2.4128 10 1 4.9167 -4.2260 1.6254 11 6 6.1709 -2.8253 2.6360 12 7 6.2915 -2.0246 3.6724 13 14 7.6081 -3.0621 1.4666 14 1 7.5342 -2.0519 0.3806 15 1 8.8833 -2.8977 2.2096 16 1 7.5493 -4.4250 0.8797 17 6 2.8989 -4.4364 3.3651 18 7 3.6241 -5.4927 4.0839 19 7 2.3334 -1.1336 3.2751 20 8 1.7944 -0.3724 2.5056 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4426 0.0005 28 1 3.2103 -2.3775 0.4331 29 1 7.1265 -1.5568 3.8292 30 1 1.9830 -4.1934 3.9036 31 1 2.6496 -4.7845 2.3626 32 1 3.9229 -5.1720 4.9927 33 1 3.0633 -6.3279 4.1613 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = 18.318981 kcal Electronic energy + Delta-G solvation = -15606.727086 eV Core-core repulsion = 13055.149296 eV Total energy + Delta-G solvation = -2551.577790 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.59696 -37.51490 -36.82566 -34.35679 -34.11178 -31.33090 -30.10663 -27.99722 -26.35711 -24.27491 -23.76134 -22.44407 -20.06977 -18.59782 -18.27186 -17.74811 -16.68556 -16.46573 -15.98470 -15.43022 -15.11271 -14.60986 -14.19151 -14.06710 -14.04728 -13.34527 -12.99851 -12.75130 -12.70127 -12.54330 -12.32865 -12.13630 -12.10016 -11.76309 -11.68947 -11.17135 -10.61192 -10.44844 -10.04006 -9.36498 -8.13357 -6.20432 0.81217 1.41341 1.42338 1.53412 1.68857 2.44060 2.49133 3.13217 3.68118 3.73911 4.01713 4.12619 4.21960 4.41883 4.50368 4.52901 4.61677 4.83322 4.85290 4.93860 4.98560 5.00103 5.09354 5.20804 5.38632 5.42961 5.50533 5.60197 5.77879 6.22210 6.42184 6.81796 6.90734 7.45557 7.72260 8.96869 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.009596 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.274953 B = 2917.278474 C = 3587.188291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.146 4.146 4 C -0.042 4.042 5 C -0.228 4.228 6 C 0.049 3.951 7 C 0.101 3.899 8 H 0.026 0.974 9 C -0.481 4.481 10 H 0.061 0.939 11 C 0.011 3.989 12 N -0.929 5.929 13 Si 0.955 3.045 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.262 1.262 17 C 0.096 3.904 18 N -0.837 5.837 19 N -0.426 5.426 20 O 0.077 5.923 21 H 0.053 0.947 22 H 0.094 0.906 23 H 0.055 0.945 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.171 0.829 29 H 0.258 0.742 30 H 0.001 0.999 31 H 0.064 0.936 32 H 0.337 0.663 33 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 2.469 -8.865 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 C -0.204 4.204 4 C -0.106 4.106 5 C -0.249 4.249 6 C -0.109 4.109 7 C 0.081 3.919 8 H 0.045 0.955 9 C -0.520 4.520 10 H 0.079 0.921 11 C -0.187 4.187 12 N -0.568 5.568 13 Si 0.780 3.220 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.186 1.186 17 C -0.036 4.036 18 N -0.367 5.367 19 N -0.135 5.135 20 O 0.016 5.984 21 H 0.072 0.928 22 H 0.113 0.887 23 H 0.074 0.926 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.189 0.811 29 H 0.067 0.933 30 H 0.019 0.981 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.574 2.923 -8.093 12.873 hybrid contribution 0.671 -0.279 0.074 0.730 sum -8.903 2.644 -8.019 12.271 Atomic orbital electron populations 1.21845 0.91925 1.02607 1.03542 1.19946 0.97580 0.95979 0.89121 1.21870 1.00756 0.94135 1.03605 1.25120 1.00280 0.97144 0.88022 1.22503 1.04302 1.00540 0.97558 1.24714 0.95862 0.97656 0.92701 1.17282 0.91603 0.86775 0.96199 0.95539 1.20932 0.94167 1.20703 1.16150 0.92101 1.25787 1.01405 0.95070 0.96411 1.70113 1.26885 1.31027 1.28802 0.85598 0.78479 0.78904 0.78992 1.20144 1.21567 1.18585 1.21518 0.92377 0.92098 0.97601 1.58393 1.46153 1.07283 1.24833 1.73750 1.15461 1.06104 1.18208 1.84643 1.55997 1.43712 1.14005 0.92763 0.88697 0.92576 0.86627 0.88420 0.92788 0.93773 0.81134 0.93325 0.98074 0.91795 0.85075 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.18 71.98 0.66 -2.04 16 2 C -0.01 -0.17 3.34 -11.54 -0.04 -0.21 16 3 C -0.15 -3.19 9.18 71.98 0.66 -2.53 16 4 C -0.04 -1.50 6.00 25.04 0.15 -1.35 16 5 C -0.23 -9.59 10.36 22.40 0.23 -9.35 16 6 C 0.05 2.44 6.21 43.58 0.27 2.71 16 7 C 0.10 5.27 2.46 -12.29 -0.03 5.24 16 8 H 0.03 1.59 7.39 -2.39 -0.02 1.57 16 9 C -0.48 -26.22 7.49 25.60 0.19 -26.03 16 10 H 0.06 3.25 7.82 -2.91 -0.02 3.23 16 11 C 0.01 0.65 5.45 84.65 0.46 1.11 16 12 N -0.93 -56.44 12.85 21.45 0.28 -56.16 16 13 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 C 0.10 4.13 6.14 86.30 0.53 4.66 16 18 N -0.84 -32.65 9.35 -186.71 -1.75 -34.39 16 19 N -0.43 -21.09 12.07 -49.54 -0.60 -21.68 16 20 O 0.08 3.28 11.20 71.61 0.80 4.08 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.12 2.34 8.12 -2.39 -0.02 2.32 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.17 6.61 8.06 -2.91 -0.02 6.59 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.34 13.25 8.99 -89.70 -0.81 12.44 16 33 H 0.34 10.62 9.08 -89.69 -0.81 9.80 16 Total: -1.00 -68.27 285.03 3.34 -64.93 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.51 Total: 24.63 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 3.09 Total: -27.78 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -2.07 Total: -112.23 kcal Atomic # 8 Polarization: 3.28 SS G_CDS: 0.80 Total: 4.08 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.27 3.34 -64.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.248 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds