Wall clock time and date at job start Mon Mar 30 2020 02:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40082 * 126.10064 * 2 1 4 4 C 1.30872 * 108.41060 * 180.13392 * 3 2 1 5 5 C 1.50701 * 125.77075 * 179.84817 * 4 3 2 6 6 C 1.53004 * 109.47006 * 254.69659 * 5 4 3 7 7 C 1.52995 * 109.47046 * 14.69459 * 5 4 3 8 8 C 1.52996 * 109.47019 * 134.69587 * 5 4 3 9 9 C 1.39667 * 108.45820 * 359.59104 * 4 3 2 10 10 C 1.35844 * 126.09844 * 179.66953 * 2 1 3 11 11 O 1.35531 * 126.26951 * 0.02562 * 10 2 1 12 12 C 1.34806 * 117.00431 * 174.73779 * 11 10 2 13 13 H 1.08005 * 119.99292 * 5.07641 * 12 11 10 14 14 C 1.38619 * 120.00230 * 185.07659 * 12 11 10 15 15 N 1.31575 * 119.99847 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99634 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47428 * 90.00420 * 16 14 12 18 18 H 1.48508 * 109.46942 * 209.99985 * 16 14 12 19 19 H 1.48500 * 109.47442 * 329.99619 * 16 14 12 20 20 H 1.09010 * 109.47261 * 275.27559 * 1 2 3 21 21 H 1.08995 * 109.46897 * 35.26964 * 1 2 3 22 22 H 1.09002 * 109.47245 * 155.27455 * 1 2 3 23 23 H 1.08998 * 109.47077 * 60.00155 * 6 5 4 24 24 H 1.09005 * 109.46774 * 179.97438 * 6 5 4 25 25 H 1.09001 * 109.46842 * 299.99762 * 6 5 4 26 26 H 1.09004 * 109.47327 * 60.00267 * 7 5 4 27 27 H 1.09005 * 109.47186 * 179.97438 * 7 5 4 28 28 H 1.08998 * 109.47473 * 300.00111 * 7 5 4 29 29 H 1.09005 * 109.47096 * 60.00174 * 8 5 4 30 30 H 1.09005 * 109.47111 * 180.02562 * 8 5 4 31 31 H 1.08995 * 109.47095 * 299.99798 * 8 5 4 32 32 H 1.08003 * 126.06970 * 180.22764 * 9 4 3 33 33 H 0.97000 * 119.99622 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2903 1.1318 0.0000 4 6 3.5372 0.7342 -0.0029 5 6 4.7480 1.6314 -0.0072 6 6 5.3806 1.6275 -1.4003 7 6 4.3280 3.0565 0.3582 8 6 5.7645 1.1210 1.0160 9 6 3.5559 -0.6624 0.0046 10 6 2.2653 -1.0976 0.0063 11 8 1.8548 -2.3892 0.0133 12 6 2.8093 -3.3354 -0.0913 13 1 3.8517 -3.0529 -0.0930 14 6 2.4528 -4.6709 -0.1967 15 7 1.1828 -5.0149 -0.1942 16 14 3.7755 -5.9818 -0.3424 17 1 4.1612 -6.4487 1.0135 18 1 3.2527 -7.1270 -1.1302 19 1 4.9640 -5.4120 -1.0264 20 1 -0.3634 0.0945 1.0234 21 1 -0.3633 0.8390 -0.5934 22 1 -0.3634 -0.9335 -0.4298 23 1 4.6564 1.9911 -2.1292 24 1 6.2562 2.2769 -1.4035 25 1 5.6799 0.6122 -1.6606 26 1 3.8772 3.0593 1.3507 27 1 5.2038 3.7054 0.3556 28 1 3.6037 3.4201 -0.3707 29 1 6.0637 0.1057 0.7557 30 1 6.6401 1.7703 1.0133 31 1 5.3138 1.1238 2.0084 32 1 4.4374 -1.2865 0.0079 33 1 0.9335 -5.9495 -0.2675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260285607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:12 Heat of formation + Delta-G solvation = 34.789461 kcal Electronic energy + Delta-G solvation = -15577.586808 eV Core-core repulsion = 13026.723231 eV Total energy + Delta-G solvation = -2550.863576 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35778 -37.30242 -36.08854 -32.22938 -31.72980 -28.38540 -26.94034 -26.76176 -25.85240 -25.06242 -21.43491 -20.08240 -18.17870 -17.48745 -16.63624 -14.99323 -14.73957 -14.32488 -14.18104 -13.79028 -13.49985 -13.31903 -12.87867 -12.30735 -12.15597 -11.84728 -11.80172 -11.59867 -11.45860 -11.34258 -10.99447 -10.80625 -10.62040 -10.55320 -10.47762 -9.72605 -9.50564 -8.85122 -8.00930 -7.20485 -6.43487 -4.07704 2.89778 3.04776 3.15683 3.18911 3.25975 3.78463 4.02610 4.86588 5.05467 5.16827 5.34796 5.36416 5.57768 5.73353 5.82560 5.86838 5.89646 6.05508 6.09430 6.13420 6.18281 6.27515 6.37007 6.48929 6.63718 6.66779 6.78779 6.90629 7.30258 7.65161 7.88543 8.01938 8.65473 9.02747 9.68891 10.75380 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.008259 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.771336 B = 3389.444968 C = 4133.149535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.395 5.395 3 N -0.325 5.325 4 C 0.108 3.892 5 C 0.014 3.986 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.134 4.134 9 C -0.375 4.375 10 C 0.308 3.692 11 O -0.186 6.186 12 C -0.376 4.376 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.872 5.872 16 Si 0.946 3.054 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.267 1.267 20 H 0.059 0.941 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 9.256 -0.021 10.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.191 5.191 3 N -0.150 5.150 4 C -0.058 4.058 5 C 0.012 3.988 6 C -0.191 4.191 7 C -0.189 4.189 8 C -0.192 4.192 9 C -0.405 4.405 10 C 0.136 3.864 11 O -0.084 6.084 12 C -0.454 4.454 13 H 0.108 0.892 14 C -0.166 4.166 15 N -0.509 5.509 16 Si 0.770 3.230 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.191 1.191 20 H 0.078 0.922 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.177 9.820 -0.020 10.671 hybrid contribution 0.952 -1.520 -0.043 1.794 sum 5.129 8.299 -0.063 9.757 Atomic orbital electron populations 1.21559 0.75417 1.03501 1.02037 1.48066 1.05447 1.01630 1.63998 1.77154 1.00702 1.05449 1.31689 1.21552 0.92604 0.93334 0.98280 1.18891 0.90513 0.93214 0.96147 1.21809 0.99828 1.02117 0.95383 1.21743 1.00527 0.94670 1.01951 1.21813 0.97512 1.01324 0.98533 1.20455 0.95705 0.93942 1.30388 1.19637 0.88913 0.83482 0.94382 1.83684 1.36056 1.07428 1.81186 1.21192 0.87221 0.84102 1.52868 0.89181 1.25260 0.97650 0.96919 0.96722 1.70045 1.15410 1.18128 1.47308 0.85639 0.79347 0.79346 0.78636 1.19915 1.20328 1.19138 0.92247 0.90723 0.89560 0.92731 0.92582 0.92120 0.92702 0.93098 0.92248 0.91990 0.92671 0.92631 0.84565 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.12 11.46 59.84 0.69 2.81 16 2 N -0.40 -8.95 4.04 -68.09 -0.28 -9.23 16 3 N -0.32 -7.01 11.87 33.64 0.40 -6.61 16 4 C 0.11 2.20 5.65 -82.47 -0.47 1.74 16 5 C 0.01 0.23 0.96 -155.66 -0.15 0.08 16 6 C -0.13 -1.87 8.46 37.16 0.31 -1.56 16 7 C -0.13 -1.84 8.02 37.16 0.30 -1.55 16 8 C -0.13 -1.89 8.20 37.16 0.30 -1.58 16 9 C -0.37 -8.66 9.15 -39.78 -0.36 -9.02 16 10 C 0.31 7.80 7.71 -16.51 -0.13 7.68 16 11 O -0.19 -5.33 9.70 0.79 0.01 -5.32 16 12 C -0.38 -10.62 9.61 30.87 0.30 -10.33 16 13 H 0.09 2.40 5.96 -52.48 -0.31 2.08 16 14 C 0.04 1.03 5.49 -17.52 -0.10 0.94 16 15 N -0.87 -25.46 13.67 55.48 0.76 -24.70 16 16 Si 0.95 20.69 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 20 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 22 H 0.09 1.61 8.06 -51.93 -0.42 1.19 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.14 3.07 6.37 -52.48 -0.33 2.74 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -31.64 282.42 -3.99 -35.63 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.81 Total: 1.10 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 0.70 Total: -10.80 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.88 Total: -40.53 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: 0.01 Total: -5.32 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.64 -3.99 -35.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.420 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds