Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46932 * 2 1 4 4 C 1.52997 * 109.47162 * 240.00126 * 2 1 3 5 5 C 1.50702 * 109.47100 * 119.99901 * 2 1 3 6 6 O 1.34035 * 126.77888 * 244.77562 * 5 2 1 7 7 N 1.20920 * 111.57142 * 180.02562 * 6 5 2 8 8 C 1.30180 * 111.60134 * 0.02562 * 7 6 5 9 9 C 1.35447 * 126.77312 * 64.80612 * 5 2 1 10 10 C 1.50703 * 128.00976 * 359.97438 * 9 5 2 11 11 H 1.08997 * 109.47225 * 327.96216 * 10 9 5 12 12 N 1.46907 * 109.47064 * 207.96254 * 10 9 5 13 13 C 1.50699 * 109.47118 * 87.96301 * 10 9 5 14 14 H 1.07994 * 120.00106 * 359.97438 * 13 10 9 15 15 C 1.37870 * 119.99761 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00585 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99904 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47421 * 120.00101 * 17 15 13 20 20 H 1.48508 * 109.47514 * 239.99974 * 17 15 13 21 21 H 1.08995 * 109.47551 * 304.79613 * 1 2 3 22 22 H 1.09005 * 109.47446 * 64.80082 * 1 2 3 23 23 H 1.09007 * 109.47022 * 184.79591 * 1 2 3 24 24 H 1.09006 * 109.46923 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47577 * 299.99747 * 3 2 1 26 26 H 1.09002 * 109.47080 * 59.99844 * 3 2 1 27 27 H 1.08997 * 109.47371 * 299.99758 * 4 2 1 28 28 H 1.09006 * 109.47287 * 60.00324 * 4 2 1 29 29 H 1.09004 * 109.47154 * 179.97438 * 4 2 1 30 30 H 1.07997 * 126.80228 * 180.02562 * 8 7 6 31 31 H 1.00907 * 110.99630 * 299.99813 * 12 10 9 32 32 H 1.00900 * 110.99709 * 63.95220 * 12 10 9 33 33 H 0.96998 * 120.00431 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 2.7311 -0.1714 2.2393 7 7 2.9930 -0.9925 3.0873 8 6 2.5224 -2.1665 2.7792 9 6 1.8671 -2.0198 1.5350 10 6 1.1512 -3.0760 0.7331 11 1 0.3250 -2.6201 0.1875 12 7 0.6296 -4.1086 1.6385 13 6 2.1127 -3.7031 -0.2433 14 1 3.1393 -3.3700 -0.2798 15 6 1.6813 -4.7015 -1.0906 16 7 0.4310 -5.1069 -1.0466 17 14 2.8729 -5.4784 -2.3014 18 1 4.2099 -4.8494 -2.1530 19 1 2.9773 -6.9344 -2.0283 20 1 2.3788 -5.2688 -3.6861 21 1 -0.3634 0.5864 0.8438 22 1 -0.3634 0.4376 -0.9299 23 1 -0.3633 -1.0241 0.0859 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6765 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1393 29 1 3.1300 -0.7208 -1.2495 30 1 2.6134 -3.0727 3.3596 31 1 1.3768 -4.5465 2.1562 32 1 -0.0658 -3.7256 2.2613 33 1 0.1275 -5.8091 -1.6430 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403291.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = 30.025885 kcal Electronic energy + Delta-G solvation = -16271.054508 eV Core-core repulsion = 13719.984367 eV Total energy + Delta-G solvation = -2551.070141 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.75179 -38.49461 -36.67908 -34.32397 -32.93691 -31.25815 -28.68188 -28.14816 -27.50876 -25.00311 -23.65946 -22.01393 -20.59260 -18.66712 -18.17823 -17.73680 -16.55419 -16.05886 -15.75411 -15.19508 -14.84993 -14.52630 -14.38920 -14.26238 -13.38117 -13.12362 -13.06234 -12.79333 -12.67679 -12.44348 -12.32724 -12.02822 -11.95826 -11.90400 -11.59313 -11.22956 -10.91217 -10.49558 -9.78660 -8.97726 -7.94940 -6.11365 0.66160 1.42460 1.44162 1.50532 1.57104 2.27367 2.50616 3.28568 3.51219 3.69901 4.05934 4.10171 4.18568 4.35876 4.52063 4.72909 4.75006 4.84262 4.91643 4.96506 5.08434 5.11178 5.19628 5.24969 5.38037 5.44361 5.62022 5.79054 5.83142 6.21009 6.68223 7.11890 7.26559 7.39025 7.57599 9.08407 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.010924 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.581459 B = 2562.607697 C = 2924.988072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 C -0.138 4.138 4 C -0.154 4.154 5 C -0.035 4.035 6 O 0.084 5.916 7 N -0.397 5.397 8 C -0.018 4.018 9 C -0.207 4.207 10 C 0.298 3.702 11 H 0.040 0.960 12 N -0.819 5.819 13 C -0.522 4.522 14 H 0.038 0.962 15 C 0.046 3.954 16 N -0.874 5.874 17 Si 0.933 3.067 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.279 1.279 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.194 0.806 31 H 0.322 0.678 32 H 0.311 0.689 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 9.709 0.993 9.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 C -0.195 4.195 4 C -0.212 4.212 5 C -0.099 4.099 6 O 0.020 5.980 7 N -0.102 5.102 8 C -0.195 4.195 9 C -0.214 4.214 10 C 0.188 3.812 11 H 0.058 0.942 12 N -0.346 5.346 13 C -0.561 4.561 14 H 0.057 0.943 15 C -0.159 4.159 16 N -0.509 5.509 17 Si 0.760 3.240 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.205 1.205 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.211 0.789 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.743 9.695 1.295 9.809 hybrid contribution 0.759 -0.849 -0.122 1.145 sum 1.502 8.846 1.173 9.049 Atomic orbital electron populations 1.21929 0.92133 1.02179 1.03357 1.19143 0.96159 0.95327 0.86971 1.21871 1.01179 0.92968 1.03495 1.22170 1.00435 1.03021 0.95525 1.24706 0.98394 0.93511 0.93296 1.84631 1.54962 1.34561 1.23837 1.73726 1.21727 1.01315 1.13451 1.25018 0.99650 0.97358 0.97485 1.23025 1.04565 0.96817 0.96956 1.17397 0.91789 0.83775 0.88262 0.94216 1.59058 1.16995 1.34268 1.24235 1.20894 0.95573 1.20738 1.18861 0.94328 1.25455 0.95869 0.96718 0.97824 1.70190 1.15873 1.28040 1.36845 0.85920 0.79963 0.78296 0.79797 1.20013 1.21290 1.20469 0.91786 0.89390 0.93546 0.92740 0.89455 0.91817 0.90490 0.90210 0.93941 0.78873 0.86606 0.87787 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.40 71.98 0.60 -3.36 16 2 C 0.03 0.78 0.82 -52.93 -0.04 0.74 16 3 C -0.14 -3.32 8.08 71.98 0.58 -2.73 16 4 C -0.15 -5.22 8.18 71.98 0.59 -4.63 16 5 C -0.04 -1.31 5.77 25.04 0.14 -1.16 16 6 O 0.08 3.16 10.69 71.68 0.77 3.93 16 7 N -0.40 -15.45 12.07 -59.26 -0.72 -16.16 16 8 C -0.02 -0.68 11.54 85.71 0.99 0.31 16 9 C -0.21 -8.50 5.07 -19.73 -0.10 -8.60 16 10 C 0.30 13.75 2.17 43.42 0.09 13.84 16 11 H 0.04 2.00 5.32 -2.39 -0.01 1.98 16 12 N -0.82 -36.44 8.37 -174.94 -1.47 -37.90 16 13 C -0.52 -26.71 6.44 25.60 0.16 -26.55 16 14 H 0.04 2.05 7.74 -2.91 -0.02 2.03 16 15 C 0.05 2.39 5.39 84.65 0.46 2.84 16 16 N -0.87 -48.16 12.77 21.44 0.27 -47.89 16 17 Si 0.93 42.14 29.54 68.60 2.03 44.17 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.05 1.60 5.60 -2.38 -0.01 1.58 16 24 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 3.22 4.28 -2.39 -0.01 3.21 16 28 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.19 6.57 7.71 -2.91 -0.02 6.55 16 31 H 0.32 13.68 8.29 -89.69 -0.74 12.93 16 32 H 0.31 12.40 9.06 -89.69 -0.81 11.59 16 33 H 0.26 13.56 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -58.29 269.92 3.94 -54.35 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.42 Total: 28.81 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.48 Total: -29.30 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -1.91 Total: -101.95 kcal Atomic # 8 Polarization: 3.16 SS G_CDS: 0.77 Total: 3.93 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -58.29 3.94 -54.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403291.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.372 kcal (2) G-P(sol) polarization free energy of solvation -58.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds