Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47140 * 239.99382 * 2 1 3 5 5 C 1.50703 * 109.46582 * 119.99692 * 2 1 3 6 6 O 1.34044 * 126.77437 * 234.89116 * 5 2 1 7 7 N 1.20930 * 111.56203 * 179.97438 * 6 5 2 8 8 C 1.30165 * 111.60717 * 0.02562 * 7 6 5 9 9 C 1.35451 * 126.77840 * 54.85513 * 5 2 1 10 10 C 1.50703 * 128.00538 * 359.97438 * 9 5 2 11 11 H 1.08994 * 109.47218 * 32.09069 * 10 9 5 12 12 N 1.46902 * 109.46927 * 152.09646 * 10 9 5 13 13 C 1.50698 * 109.46842 * 272.09019 * 10 9 5 14 14 H 1.08002 * 120.00430 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99889 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00037 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99882 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47053 * 60.00489 * 17 15 13 19 19 H 1.48505 * 109.46793 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47542 * 300.00046 * 17 15 13 21 21 H 1.08997 * 109.47805 * 300.00447 * 1 2 3 22 22 H 1.09005 * 109.47237 * 60.00308 * 1 2 3 23 23 H 1.09005 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46734 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46797 * 299.99353 * 3 2 1 26 26 H 1.08997 * 109.47444 * 60.00071 * 3 2 1 27 27 H 1.08999 * 109.47399 * 305.83810 * 4 2 1 28 28 H 1.08995 * 109.47196 * 65.83577 * 4 2 1 29 29 H 1.09005 * 109.46962 * 185.83641 * 4 2 1 30 30 H 1.08003 * 126.80472 * 179.97438 * 8 7 6 31 31 H 1.00893 * 111.00477 * 59.99939 * 12 10 9 32 32 H 1.00906 * 110.99694 * 183.95856 * 12 10 9 33 33 H 0.96993 * 120.00375 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 8 2.8818 -0.2251 2.1467 7 7 3.0982 -1.0302 3.0227 8 6 2.4452 -2.1390 2.8267 9 6 1.7136 -1.9650 1.6295 10 6 0.7921 -2.9476 0.9539 11 1 0.8346 -2.8026 -0.1255 12 7 1.2118 -4.3169 1.2809 13 6 -0.6186 -2.7261 1.4354 14 1 -0.8271 -1.9510 2.1580 15 6 -1.6433 -3.5123 0.9526 16 7 -1.3894 -4.4558 0.0723 17 14 -3.3920 -3.2373 1.5490 18 1 -3.8157 -1.8529 1.2184 19 1 -4.3000 -4.2057 0.8834 20 1 -3.4505 -3.4350 3.0196 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3635 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.5938 -1.7144 -1.3029 28 1 1.7645 -0.1509 -2.1361 29 1 3.1250 -0.8127 -1.1984 30 1 2.4592 -3.0178 3.4544 31 1 1.1810 -4.4765 2.2767 32 1 0.6495 -4.9948 0.7884 33 1 -2.1102 -5.0091 -0.2670 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 40.054073 kcal Electronic energy + Delta-G solvation = -16274.655349 eV Core-core repulsion = 13724.020064 eV Total energy + Delta-G solvation = -2550.635286 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.07603 -37.02994 -35.04662 -32.66804 -30.99887 -29.61867 -27.18063 -26.83005 -25.84214 -23.35784 -22.11056 -20.28220 -19.05108 -16.89990 -16.40345 -16.14758 -14.96157 -14.26076 -14.16903 -13.58165 -13.45464 -13.03461 -12.84081 -12.20694 -11.95593 -11.80561 -11.38551 -11.20556 -11.09049 -10.98119 -10.78267 -10.58582 -10.52341 -10.25882 -10.16845 -9.62853 -9.38255 -8.74565 -8.18881 -7.27658 -6.17402 -4.32558 2.30949 3.18614 3.20220 3.24651 3.31275 3.85170 4.26982 5.02645 5.10741 5.19112 5.34846 5.39161 5.75850 5.90734 5.97996 6.08630 6.15989 6.22791 6.25897 6.35088 6.45926 6.48443 6.64822 6.65265 6.85803 6.97723 7.24124 7.55749 7.66765 8.01157 8.58006 8.84747 9.03411 9.06414 9.37694 10.79636 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.010910 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.284038 B = 2565.888402 C = 2926.479369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.030 3.970 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.054 4.054 6 O 0.082 5.918 7 N -0.392 5.392 8 C -0.004 4.004 9 C -0.132 4.132 10 C 0.276 3.724 11 H 0.058 0.942 12 N -0.852 5.852 13 C -0.540 4.540 14 H 0.055 0.945 15 C 0.069 3.931 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.277 1.277 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.179 0.821 31 H 0.311 0.689 32 H 0.358 0.642 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 6.183 -1.576 7.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 C -0.200 4.200 4 C -0.199 4.199 5 C -0.118 4.118 6 O 0.017 5.983 7 N -0.097 5.097 8 C -0.181 4.181 9 C -0.136 4.136 10 C 0.165 3.835 11 H 0.075 0.925 12 N -0.381 5.381 13 C -0.580 4.580 14 H 0.074 0.926 15 C -0.134 4.134 16 N -0.530 5.530 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.127 0.873 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.703 6.667 -1.087 8.231 hybrid contribution -2.538 -0.520 0.468 2.633 sum 2.165 6.147 -0.619 6.546 Atomic orbital electron populations 1.22248 0.91864 1.06736 1.00556 1.18915 0.96463 0.93618 0.88186 1.21890 1.01103 0.95125 1.01901 1.21939 1.00826 1.01744 0.95424 1.23991 0.97238 0.95147 0.95424 1.84643 1.50038 1.37304 1.26295 1.73728 1.22786 1.02212 1.10979 1.24729 0.97405 0.97384 0.98613 1.21729 1.00308 0.95808 0.95780 1.17457 0.87677 0.83550 0.94794 0.92476 1.59435 1.61302 1.06236 1.11161 1.21719 0.92474 1.18117 1.25660 0.92643 1.24982 0.99138 0.94932 0.94368 1.69715 1.33198 1.20385 1.29681 0.86615 0.83969 0.78246 0.79029 1.19982 1.21162 1.20278 0.93197 0.92969 0.87269 0.92518 0.92179 0.92452 0.90756 0.92090 0.92913 0.80351 0.87984 0.82602 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.16 37.16 0.30 -2.48 16 2 C 0.03 0.50 0.82 -155.66 -0.13 0.37 16 3 C -0.14 -1.98 8.09 37.16 0.30 -1.68 16 4 C -0.14 -2.24 8.34 37.16 0.31 -1.93 16 5 C -0.05 -1.08 5.77 -35.30 -0.20 -1.28 16 6 O 0.08 1.64 10.69 17.17 0.18 1.82 16 7 N -0.39 -8.11 12.07 30.35 0.37 -7.74 16 8 C 0.00 -0.08 11.53 -17.06 -0.20 -0.27 16 9 C -0.13 -2.85 5.11 -104.42 -0.53 -3.38 16 10 C 0.28 6.42 2.28 -70.01 -0.16 6.26 16 11 H 0.06 1.43 5.35 -51.93 -0.28 1.15 16 12 N -0.85 -19.44 9.03 -6.65 -0.06 -19.50 16 13 C -0.54 -13.47 6.44 -34.44 -0.22 -13.69 16 14 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.07 1.73 5.38 -17.82 -0.10 1.64 16 16 N -0.89 -23.01 11.54 55.43 0.64 -22.37 16 17 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.11 2.30 4.25 -51.93 -0.22 2.08 16 24 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.34 5.82 -51.93 -0.30 1.04 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.18 3.32 7.72 -52.48 -0.40 2.92 16 31 H 0.31 6.80 8.29 -39.30 -0.33 6.47 16 32 H 0.36 8.67 7.08 -39.29 -0.28 8.39 16 33 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -26.01 267.65 -4.79 -30.80 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.31 Total: 14.39 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.63 Total: -16.45 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.95 Total: -49.61 kcal Atomic # 8 Polarization: 1.64 SS G_CDS: 0.18 Total: 1.82 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.01 -4.79 -30.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.857 kcal (2) G-P(sol) polarization free energy of solvation -26.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds