Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47140 * 239.99382 * 2 1 3 5 5 C 1.50703 * 109.46582 * 119.99692 * 2 1 3 6 6 O 1.34044 * 126.77437 * 234.89116 * 5 2 1 7 7 N 1.20930 * 111.56203 * 179.97438 * 6 5 2 8 8 C 1.30165 * 111.60717 * 0.02562 * 7 6 5 9 9 C 1.35451 * 126.77840 * 54.85513 * 5 2 1 10 10 C 1.50703 * 128.00538 * 359.97438 * 9 5 2 11 11 H 1.08994 * 109.47218 * 32.09069 * 10 9 5 12 12 N 1.46902 * 109.46927 * 152.09646 * 10 9 5 13 13 C 1.50698 * 109.46842 * 272.09019 * 10 9 5 14 14 H 1.08002 * 120.00430 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99889 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00037 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99882 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47053 * 60.00489 * 17 15 13 19 19 H 1.48505 * 109.46793 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47542 * 300.00046 * 17 15 13 21 21 H 1.08997 * 109.47805 * 300.00447 * 1 2 3 22 22 H 1.09005 * 109.47237 * 60.00308 * 1 2 3 23 23 H 1.09005 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46734 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46797 * 299.99353 * 3 2 1 26 26 H 1.08997 * 109.47444 * 60.00071 * 3 2 1 27 27 H 1.08999 * 109.47399 * 305.83810 * 4 2 1 28 28 H 1.08995 * 109.47196 * 65.83577 * 4 2 1 29 29 H 1.09005 * 109.46962 * 185.83641 * 4 2 1 30 30 H 1.08003 * 126.80472 * 179.97438 * 8 7 6 31 31 H 1.00893 * 111.00477 * 59.99939 * 12 10 9 32 32 H 1.00906 * 110.99694 * 183.95856 * 12 10 9 33 33 H 0.96993 * 120.00375 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 8 2.8818 -0.2251 2.1467 7 7 3.0982 -1.0302 3.0227 8 6 2.4452 -2.1390 2.8267 9 6 1.7136 -1.9650 1.6295 10 6 0.7921 -2.9476 0.9539 11 1 0.8346 -2.8026 -0.1255 12 7 1.2118 -4.3169 1.2809 13 6 -0.6186 -2.7261 1.4354 14 1 -0.8271 -1.9510 2.1580 15 6 -1.6433 -3.5123 0.9526 16 7 -1.3894 -4.4558 0.0723 17 14 -3.3920 -3.2373 1.5490 18 1 -3.8157 -1.8529 1.2184 19 1 -4.3000 -4.2057 0.8834 20 1 -3.4505 -3.4350 3.0196 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3635 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.5938 -1.7144 -1.3029 28 1 1.7645 -0.1509 -2.1361 29 1 3.1250 -0.8127 -1.1984 30 1 2.4592 -3.0178 3.4544 31 1 1.1810 -4.4765 2.2767 32 1 0.6495 -4.9948 0.7884 33 1 -2.1102 -5.0091 -0.2670 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 23.970602 kcal Electronic energy + Delta-G solvation = -16275.352781 eV Core-core repulsion = 13724.020064 eV Total energy + Delta-G solvation = -2551.332717 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.69502 -38.48616 -36.74621 -34.43337 -32.79457 -31.25242 -28.65665 -28.14116 -27.49485 -25.11844 -23.64846 -21.96406 -20.57595 -18.68681 -18.17553 -17.66979 -16.77982 -15.99506 -15.71292 -15.01508 -14.83476 -14.72826 -14.42853 -13.94369 -13.28150 -13.11956 -13.07317 -12.83217 -12.79832 -12.45320 -12.32333 -12.08783 -12.01789 -11.86267 -11.83382 -11.25504 -11.03954 -10.64982 -9.84455 -9.16380 -8.09336 -6.30145 0.71088 1.39399 1.41687 1.47330 1.59233 2.30618 2.40848 3.08543 3.57156 3.73583 4.06194 4.10811 4.27091 4.40971 4.54321 4.78906 4.80799 4.85147 4.93435 4.97884 5.08588 5.13657 5.21644 5.29838 5.34865 5.49014 5.66030 5.71668 5.79259 6.10895 6.66055 6.94797 7.13245 7.42343 7.44623 8.85309 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.010910 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.284038 B = 2565.888402 C = 2926.479369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.026 3.974 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.042 4.042 6 O 0.086 5.914 7 N -0.399 5.399 8 C -0.008 4.008 9 C -0.163 4.163 10 C 0.285 3.715 11 H 0.039 0.961 12 N -0.847 5.847 13 C -0.541 4.541 14 H 0.041 0.959 15 C 0.033 3.967 16 N -0.910 5.910 17 Si 0.945 3.055 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.280 1.280 21 H 0.043 0.957 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.194 0.806 31 H 0.317 0.683 32 H 0.349 0.651 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 7.484 -1.956 8.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.106 4.106 6 O 0.022 5.978 7 N -0.105 5.105 8 C -0.186 4.186 9 C -0.167 4.167 10 C 0.174 3.826 11 H 0.057 0.943 12 N -0.376 5.376 13 C -0.580 4.580 14 H 0.059 0.941 15 C -0.168 4.168 16 N -0.550 5.550 17 Si 0.772 3.228 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.206 1.206 21 H 0.062 0.938 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.211 0.789 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.731 7.979 -1.458 9.390 hybrid contribution -2.520 -0.905 0.572 2.738 sum 2.211 7.074 -0.886 7.464 Atomic orbital electron populations 1.22153 0.92588 1.04655 1.01612 1.19130 0.95804 0.95508 0.87085 1.21865 1.01544 0.92800 1.03242 1.21905 1.00887 1.00519 0.96148 1.24573 0.95768 0.94665 0.95622 1.84633 1.49928 1.37083 1.26184 1.73713 1.23165 1.02268 1.11377 1.24981 0.97067 0.97935 0.98568 1.21660 1.01553 0.96633 0.96863 1.17209 0.87515 0.83985 0.93843 0.94347 1.59418 1.60827 1.05945 1.11417 1.21762 0.93589 1.17535 1.25140 0.94078 1.25518 1.01870 0.94869 0.94565 1.69794 1.33893 1.20901 1.30385 0.85810 0.80651 0.78138 0.78234 1.19708 1.20876 1.20574 0.93819 0.90214 0.90783 0.91810 0.89422 0.92618 0.93640 0.89046 0.92376 0.78940 0.87420 0.83558 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 8.16 71.98 0.59 -4.63 16 2 C 0.03 0.83 0.82 -52.93 -0.04 0.78 16 3 C -0.14 -3.37 8.09 71.98 0.58 -2.79 16 4 C -0.14 -4.09 8.34 71.98 0.60 -3.49 16 5 C -0.04 -1.64 5.77 25.04 0.14 -1.49 16 6 O 0.09 3.31 10.69 71.59 0.77 4.08 16 7 N -0.40 -16.13 12.07 -59.26 -0.72 -16.85 16 8 C -0.01 -0.33 11.53 85.71 0.99 0.66 16 9 C -0.16 -7.00 5.11 -19.73 -0.10 -7.10 16 10 C 0.29 13.43 2.28 43.42 0.10 13.52 16 11 H 0.04 1.97 5.35 -2.39 -0.01 1.96 16 12 N -0.85 -38.98 9.03 -174.95 -1.58 -40.56 16 13 C -0.54 -27.16 6.44 25.60 0.16 -27.00 16 14 H 0.04 2.15 7.74 -2.91 -0.02 2.12 16 15 C 0.03 1.65 5.38 84.66 0.46 2.10 16 16 N -0.91 -47.22 11.54 21.45 0.25 -46.97 16 17 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 23 H 0.07 3.11 4.25 -2.38 -0.01 3.10 16 24 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.62 5.82 -2.39 -0.01 1.61 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 30 H 0.19 7.06 7.72 -2.91 -0.02 7.04 16 31 H 0.32 13.85 8.29 -89.70 -0.74 13.11 16 32 H 0.35 17.13 7.08 -89.69 -0.63 16.50 16 33 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -54.49 267.65 3.98 -50.51 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.25 Total: 36.25 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 3.48 Total: -29.43 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -2.05 Total: -104.38 kcal Atomic # 8 Polarization: 3.31 SS G_CDS: 0.77 Total: 4.08 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -54.49 3.98 -50.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.479 kcal (2) G-P(sol) polarization free energy of solvation -54.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds