Wall clock time and date at job start Mon Mar 30 2020 02:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.36603 * 125.77061 * 60.02672 * 4 2 1 6 6 H 0.96996 * 125.91675 * 0.02562 * 5 4 2 7 7 N 1.40125 * 108.17933 * 179.97438 * 5 4 2 8 8 C 1.46497 * 126.16600 * 180.02562 * 7 5 4 9 9 C 1.34874 * 107.66729 * 0.02562 * 7 5 4 10 10 O 1.21779 * 126.19135 * 180.02562 * 9 7 5 11 11 C 1.34821 * 125.77561 * 239.71866 * 4 2 1 12 12 C 1.50695 * 125.95960 * 359.97438 * 11 4 2 13 13 C 1.50702 * 109.47074 * 94.99956 * 12 11 4 14 14 H 1.08002 * 120.00069 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99798 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99984 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46919 * 90.00556 * 17 15 13 19 19 H 1.48497 * 109.47136 * 210.00655 * 17 15 13 20 20 H 1.48495 * 109.47291 * 330.00638 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46748 * 90.00159 * 8 7 5 29 29 H 1.09000 * 109.47202 * 209.99723 * 8 7 5 30 30 H 1.08997 * 109.47104 * 330.00786 * 8 7 5 31 31 H 1.08998 * 109.47480 * 215.00275 * 12 11 4 32 32 H 1.09004 * 109.47501 * 335.00828 * 12 11 4 33 33 H 0.96998 * 119.99753 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7765 -0.3478 -2.5223 6 1 1.2415 0.4102 -2.8052 7 7 2.4218 -1.2596 -3.3683 8 6 2.4084 -1.2386 -4.8331 9 6 3.0575 -2.1600 -2.5910 10 8 3.7242 -3.1020 -2.9797 11 6 2.8152 -1.8081 -1.2423 12 6 3.3384 -2.5350 -0.0304 13 6 2.4181 -3.6804 0.3046 14 1 1.5421 -3.8638 -0.2999 15 6 2.6950 -4.4948 1.3822 16 7 3.7619 -4.2717 2.1180 17 14 1.5545 -5.9149 1.7970 18 1 2.0010 -7.1347 1.0772 19 1 1.5864 -6.1641 3.2605 20 1 0.1696 -5.5748 1.3828 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 3.2443 -0.6402 -5.1955 29 1 2.4991 -2.2566 -5.2119 30 1 1.4719 -0.8032 -5.1816 31 1 4.3363 -2.9201 -0.2404 32 1 3.3847 -1.8473 0.8140 33 1 3.9564 -4.8444 2.8763 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:05 Heat of formation + Delta-G solvation = 26.758189 kcal Electronic energy + Delta-G solvation = -15746.945148 eV Core-core repulsion = 13195.733310 eV Total energy + Delta-G solvation = -2551.211838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92388 -36.67732 -35.13463 -33.19066 -31.91009 -30.18150 -27.38508 -26.98107 -25.95184 -23.01687 -21.94325 -19.60834 -18.88228 -17.11125 -16.15079 -15.39792 -15.29194 -14.43711 -14.36854 -14.28031 -13.39041 -13.27314 -12.73286 -12.58803 -12.17871 -12.15680 -11.72996 -11.51336 -11.31998 -11.03657 -10.89796 -10.71713 -10.55394 -10.31514 -9.64088 -9.29194 -8.88448 -8.36626 -8.19909 -6.88761 -5.81727 -3.83318 2.22257 2.35757 3.42885 3.48757 3.51655 4.12919 4.33797 4.62655 4.95033 5.11731 5.14757 5.37791 5.38804 5.51331 5.61229 5.68311 5.71361 5.91699 5.98754 6.14779 6.23398 6.41504 6.48164 6.62314 6.76509 7.32173 7.69706 7.86565 7.94580 8.14230 8.24094 8.60696 9.06367 9.20280 9.78114 11.27172 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.009977 C = 0.008058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.984151 B = 2805.850277 C = 3473.853196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C -0.144 4.144 4 C 0.150 3.850 5 N -0.515 5.515 6 H 0.427 0.573 7 N -0.434 5.434 8 C 0.108 3.892 9 C 0.534 3.466 10 O -0.547 6.547 11 C -0.242 4.242 12 C 0.097 3.903 13 C -0.496 4.496 14 H 0.051 0.949 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 13.108 -7.497 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.055 4.055 3 C -0.202 4.202 4 C 0.039 3.961 5 N -0.240 5.240 6 H 0.271 0.729 7 N -0.259 5.259 8 C -0.033 4.033 9 C 0.332 3.668 10 O -0.425 6.425 11 C -0.254 4.254 12 C 0.059 3.941 13 C -0.535 4.535 14 H 0.069 0.931 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.201 1.201 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.134 0.866 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.426 12.508 -7.850 16.105 hybrid contribution -0.979 -0.414 -0.153 1.074 sum -7.405 12.094 -8.003 16.283 Atomic orbital electron populations 1.21803 0.94279 1.02822 1.01087 1.19989 0.95775 0.95187 0.94536 1.21847 1.01842 0.95096 1.01367 1.20473 0.96549 0.95693 0.83359 1.43459 1.53121 1.26881 1.00586 0.72913 1.48309 1.49737 1.24830 1.02977 1.21644 1.01549 1.04106 0.76007 1.17218 0.80601 0.81698 0.87305 1.90798 1.42627 1.29447 1.79633 1.21182 1.08001 0.99679 0.96580 1.17535 0.96257 0.93457 0.86868 1.21125 1.08871 1.12227 1.11241 0.93068 1.24970 0.95420 0.97531 0.96528 1.69954 1.26220 1.39156 1.18480 0.86634 0.81217 0.83219 0.77167 1.20785 1.21359 1.20066 0.91509 0.93629 0.92028 0.86629 0.93449 0.91944 0.92032 0.92307 0.89151 0.91273 0.95367 0.95569 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.18 37.16 0.34 -1.45 16 2 C -0.03 -0.51 3.26 -91.77 -0.30 -0.81 16 3 C -0.14 -1.65 9.18 37.16 0.34 -1.31 16 4 C 0.15 2.69 5.71 -81.68 -0.47 2.22 16 5 N -0.51 -7.63 7.30 33.67 0.25 -7.39 16 6 H 0.43 4.48 8.96 -182.58 -1.64 2.84 16 7 N -0.43 -7.60 4.02 -70.06 -0.28 -7.89 16 8 C 0.11 1.35 11.40 59.85 0.68 2.03 16 9 C 0.53 12.58 7.91 -14.98 -0.12 12.47 16 10 O -0.55 -15.00 17.84 5.12 0.09 -14.91 16 11 C -0.24 -5.66 5.32 -104.60 -0.56 -6.22 16 12 C 0.10 2.66 5.15 -29.04 -0.15 2.51 16 13 C -0.50 -14.70 9.09 -34.44 -0.31 -15.01 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 17 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.12 2.02 6.62 -51.93 -0.34 1.67 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.71 6.88 -51.93 -0.36 0.35 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -36.27 284.83 -6.68 -42.94 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.10 Total: -3.74 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.64 Total: -4.03 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.70 Total: -42.11 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.09 Total: -14.91 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -36.27 -6.68 -42.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.701 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds