Wall clock time and date at job start Mon Mar 30 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48148 * 110.99443 * 2 1 4 4 H 1.08993 * 110.94348 * 213.65471 * 3 2 1 5 5 C 1.52992 * 110.94938 * 337.32829 * 3 2 1 6 6 C 1.53779 * 113.61901 * 279.13782 * 5 3 2 7 7 C 1.53954 * 87.01906 * 220.05229 * 6 5 3 8 8 C 1.53776 * 87.11335 * 25.36022 * 7 6 5 9 9 C 1.54794 * 101.87187 * 95.47782 * 3 2 1 10 10 C 1.51807 * 102.23687 * 23.99686 * 9 3 2 11 11 O 1.21291 * 126.04184 * 165.16077 * 10 9 3 12 12 N 1.34590 * 107.92120 * 345.17515 * 10 9 3 13 13 C 1.37096 * 123.52986 * 178.40729 * 12 10 9 14 14 H 1.08004 * 120.00315 * 146.31237 * 13 12 10 15 15 C 1.38950 * 120.00052 * 326.31167 * 13 12 10 16 16 N 1.31413 * 119.99612 * 339.98967 * 15 13 12 17 17 Si 1.86800 * 120.00278 * 159.98618 * 15 13 12 18 18 H 1.48497 * 109.46731 * 94.62643 * 17 15 13 19 19 H 1.48502 * 109.46999 * 214.62787 * 17 15 13 20 20 H 1.48490 * 109.47010 * 334.62492 * 17 15 13 21 21 H 1.09005 * 109.47278 * 59.99779 * 1 2 3 22 22 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47323 * 299.99873 * 1 2 3 24 24 H 1.09004 * 112.85124 * 50.34036 * 5 3 2 25 25 H 1.09009 * 113.61049 * 334.56763 * 6 5 3 26 26 H 1.08996 * 113.62004 * 105.46922 * 6 5 3 27 27 H 1.09003 * 113.53294 * 270.80649 * 7 6 5 28 28 H 1.08999 * 113.74239 * 139.94892 * 7 6 5 29 29 H 1.09001 * 113.61199 * 220.08626 * 8 7 6 30 30 H 1.08997 * 113.68955 * 89.20255 * 8 7 6 31 31 H 1.09001 * 110.84957 * 142.18413 * 9 3 2 32 32 H 1.08999 * 110.84928 * 265.80687 * 9 3 2 33 33 H 0.97004 * 120.00101 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3831 0.0000 4 1 2.9304 1.4433 -0.5641 5 6 0.9649 2.3662 -0.5507 6 6 0.9049 2.4013 -2.0869 7 6 0.7435 3.9275 -1.9656 8 6 1.4669 3.8184 -0.6130 9 6 2.2489 1.6286 1.5079 10 6 2.4110 0.2166 2.0413 11 8 2.8686 -0.0898 3.1220 12 7 1.9576 -0.6351 1.1030 13 6 1.9843 -1.9988 1.2418 14 1 1.1988 -2.6011 0.8096 15 6 3.0218 -2.6061 1.9385 16 7 4.1538 -1.9644 2.1223 17 14 2.8076 -4.3345 2.6139 18 1 3.3486 -5.3168 1.6405 19 1 3.5395 -4.4575 3.9002 20 1 1.3645 -4.6030 2.8379 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.0117 2.2618 -0.0779 25 1 1.8352 2.0975 -2.5672 26 1 0.0302 1.9003 -2.5014 27 1 -0.2943 4.2501 -1.8810 28 1 1.3013 4.4888 -2.7152 29 1 1.0451 4.4599 0.1607 30 1 2.5510 3.9028 -0.6881 31 1 3.1591 2.2083 1.6614 32 1 1.3919 2.1210 1.9675 33 1 4.8781 -2.3882 2.6090 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:08 Heat of formation + Delta-G solvation = 44.217518 kcal Electronic energy + Delta-G solvation = -16216.761994 eV Core-core repulsion = 13666.307249 eV Total energy + Delta-G solvation = -2550.454745 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30869 -38.09979 -35.42542 -33.04423 -30.59044 -29.96254 -26.15282 -25.46380 -25.04935 -23.60406 -20.63228 -19.74889 -19.10394 -16.79939 -15.87261 -15.59478 -15.14999 -14.44852 -14.18368 -13.84469 -13.17695 -12.91033 -12.49725 -12.35489 -12.31345 -11.93065 -11.55622 -11.46227 -11.15024 -10.87964 -10.79713 -10.47412 -10.40179 -10.26965 -10.13402 -9.98379 -9.10196 -8.65204 -7.65043 -6.98795 -6.10842 -3.77292 3.30823 3.37082 3.41389 4.00088 4.24079 4.50700 4.74852 4.79520 4.84204 5.00095 5.27457 5.44145 5.50711 5.54826 5.59662 5.77055 5.78672 5.88586 5.95353 5.98392 6.09315 6.09551 6.18766 6.33221 6.42977 6.49120 6.70788 6.84301 7.39634 7.63362 8.33085 8.97008 9.33736 9.73787 10.36708 10.97666 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052439 B = 0.008252 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.823056 B = 3392.322393 C = 3670.408284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.303 5.303 3 C 0.073 3.927 4 H 0.095 0.905 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.144 4.144 8 C -0.132 4.132 9 C -0.180 4.180 10 C 0.456 3.544 11 O -0.527 6.527 12 N -0.307 5.307 13 C -0.320 4.320 14 H 0.086 0.914 15 C 0.052 3.948 16 N -0.822 5.822 17 Si 0.924 3.076 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.022 0.978 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 9.105 -7.307 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.117 5.117 3 C -0.035 4.035 4 H 0.113 0.887 5 C -0.130 4.130 6 C -0.166 4.166 7 C -0.181 4.181 8 C -0.170 4.170 9 C -0.223 4.223 10 C 0.241 3.759 11 O -0.403 6.403 12 N -0.117 5.117 13 C -0.447 4.447 14 H 0.104 0.896 15 C -0.160 4.160 16 N -0.456 5.456 17 Si 0.750 3.250 18 H -0.207 1.207 19 H -0.208 1.208 20 H -0.195 1.195 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.937 8.586 -7.092 12.620 hybrid contribution -0.270 -0.251 0.887 0.960 sum -6.206 8.335 -6.205 12.103 Atomic orbital electron populations 1.23023 0.90033 1.02146 0.99627 1.64843 1.06163 1.12224 1.28498 1.23005 0.98116 0.87415 0.94990 0.88664 1.22812 0.99088 0.94503 0.96629 1.22944 1.02438 0.95492 0.95707 1.22856 1.00456 0.97071 0.97738 1.22870 1.00716 0.96126 0.97318 1.22861 1.02981 0.99507 0.96924 1.20344 0.84648 0.85700 0.85213 1.90525 1.47286 1.80951 1.21508 1.43404 1.54882 1.04800 1.08638 1.18976 1.08349 0.78918 1.38487 0.89588 1.25235 0.93638 0.99089 0.98017 1.69947 1.02261 1.37912 1.35435 0.86009 0.78490 0.81995 0.78467 1.20666 1.20833 1.19537 0.91109 0.91326 0.95940 0.88774 0.89714 0.91568 0.90586 0.91701 0.91677 0.89925 0.89547 0.90184 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 8.43 60.06 0.51 0.51 16 2 N -0.30 -6.62 5.59 -112.12 -0.63 -7.25 16 3 C 0.07 1.33 3.20 -66.08 -0.21 1.12 16 4 H 0.10 1.78 8.11 -51.93 -0.42 1.36 16 5 C -0.11 -1.52 1.97 -89.81 -0.18 -1.69 16 6 C -0.13 -1.52 7.18 -25.83 -0.19 -1.71 16 7 C -0.14 -1.45 8.09 -25.83 -0.21 -1.66 16 8 C -0.13 -1.52 7.44 -25.92 -0.19 -1.71 16 9 C -0.18 -3.72 6.40 -26.39 -0.17 -3.89 16 10 C 0.46 12.53 7.39 -10.52 -0.08 12.45 16 11 O -0.53 -16.68 15.33 5.55 0.09 -16.60 16 12 N -0.31 -8.24 2.67 -10.64 -0.03 -8.27 16 13 C -0.32 -9.19 9.73 -14.93 -0.15 -9.34 16 14 H 0.09 2.34 7.77 -52.48 -0.41 1.94 16 15 C 0.05 1.50 4.73 -17.47 -0.08 1.41 16 16 N -0.82 -25.40 11.24 55.50 0.62 -24.77 16 17 Si 0.92 22.21 29.60 -169.99 -5.03 17.18 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H 0.07 1.05 5.79 -51.93 -0.30 0.74 16 22 H 0.07 1.30 7.89 -51.93 -0.41 0.89 16 23 H 0.02 0.40 7.67 -51.93 -0.40 0.00 16 24 H 0.09 1.28 6.25 -51.93 -0.32 0.95 16 25 H 0.08 1.05 8.08 -51.92 -0.42 0.63 16 26 H 0.07 0.75 7.63 -51.93 -0.40 0.35 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.08 1.49 7.91 -51.93 -0.41 1.08 16 33 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 266.36 15.07 4.01 4.01 Total: -1.00 -34.08 266.36 -6.64 -40.72 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.73 Total: -0.53 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.94 Total: -4.49 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.03 Total: -40.29 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.09 Total: -16.60 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.08 -6.64 -40.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.935 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds