Wall clock time and date at job start Mon Mar 30 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48307 * 110.94137 * 2 1 4 4 H 1.09006 * 111.16575 * 30.17414 * 3 2 1 5 5 C 1.53002 * 110.83846 * 266.42860 * 3 2 1 6 6 C 1.53784 * 113.61754 * 170.51895 * 5 3 2 7 7 C 1.53778 * 87.08211 * 220.02097 * 6 5 3 8 8 C 1.53783 * 113.61471 * 73.01786 * 5 3 2 9 9 C 1.54791 * 101.80048 * 148.37450 * 3 2 1 10 10 C 1.51808 * 102.23206 * 335.79562 * 9 3 2 11 11 O 1.21291 * 126.03887 * 194.80920 * 10 9 3 12 12 N 1.34590 * 107.91977 * 14.81976 * 10 9 3 13 13 C 1.37101 * 123.52625 * 181.59347 * 12 10 9 14 14 H 1.08006 * 119.99855 * 35.99194 * 13 12 10 15 15 C 1.38945 * 120.00017 * 215.99344 * 13 12 10 16 16 N 1.31406 * 120.00241 * 11.13182 * 15 13 12 17 17 Si 1.86802 * 119.99737 * 191.13514 * 15 13 12 18 18 H 1.48501 * 109.47210 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47262 * 299.99942 * 17 15 13 20 20 H 1.48508 * 109.46958 * 60.00064 * 17 15 13 21 21 H 1.08998 * 109.46676 * 294.01116 * 1 2 3 22 22 H 1.08998 * 109.47230 * 54.01582 * 1 2 3 23 23 H 1.09007 * 109.47113 * 174.01566 * 1 2 3 24 24 H 1.08995 * 112.85175 * 301.82254 * 5 3 2 25 25 H 1.09001 * 113.61389 * 334.56465 * 6 5 3 26 26 H 1.08993 * 113.61467 * 105.47068 * 6 5 3 27 27 H 1.09003 * 113.61325 * 270.88104 * 7 6 5 28 28 H 1.08998 * 113.61626 * 139.97978 * 7 6 5 29 29 H 1.08998 * 113.61776 * 254.52884 * 8 5 3 30 30 H 1.09004 * 113.61002 * 25.35494 * 8 5 3 31 31 H 1.09000 * 110.85015 * 217.60958 * 9 3 2 32 32 H 1.09003 * 110.85220 * 93.98288 * 9 3 2 33 33 H 0.97006 * 120.00098 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3851 0.0000 4 1 1.3190 2.0668 0.5109 5 6 2.2768 1.8616 -1.4272 6 6 2.6078 3.3604 -1.5229 7 6 1.7543 3.3868 -2.8018 8 6 1.0036 2.1717 -2.2318 9 6 3.3172 1.2196 0.7945 10 6 3.0399 -0.0221 1.6227 11 8 3.6805 -0.3981 2.5815 12 7 1.9576 -0.6320 1.1048 13 6 1.4077 -1.7729 1.6298 14 1 1.3943 -1.9233 2.6992 15 6 0.8675 -2.7356 0.7860 16 7 1.0741 -2.6643 -0.5097 17 14 -0.1526 -4.1314 1.4937 18 1 -0.6105 -5.0172 0.3933 19 1 0.6734 -4.9136 2.4482 20 1 -1.3321 -3.5726 2.2022 21 1 -0.3632 0.4182 0.9387 22 1 -0.3633 0.6038 -0.8315 23 1 -0.3634 -1.0221 -0.1071 24 1 2.9832 1.2225 -1.9569 25 1 2.1914 3.9524 -0.7078 26 1 3.6640 3.5639 -1.6986 27 1 2.3185 3.1658 -3.7079 28 1 1.1346 4.2787 -2.8948 29 1 0.7648 1.4158 -2.9799 30 1 0.1483 2.4374 -1.6105 31 1 3.4942 2.0826 1.4364 32 1 4.1585 1.0568 0.1208 33 1 0.6967 -3.3363 -1.0988 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:10 Heat of formation + Delta-G solvation = 36.103818 kcal Electronic energy + Delta-G solvation = -16255.823065 eV Core-core repulsion = 13705.016483 eV Total energy + Delta-G solvation = -2550.806582 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05443 -38.07214 -35.73835 -33.20989 -30.67831 -30.24600 -26.15215 -25.31488 -24.88255 -23.29495 -20.81099 -19.53652 -19.09391 -17.21415 -15.83116 -15.51597 -14.92526 -14.52201 -14.32334 -13.54426 -13.21734 -12.80457 -12.69415 -12.31685 -12.16717 -11.92640 -11.65339 -11.55172 -11.06140 -10.89957 -10.71839 -10.63540 -10.44514 -10.25607 -9.91974 -9.83853 -9.50050 -8.58973 -8.23069 -6.67722 -6.24614 -4.02903 3.16456 3.22159 3.24601 3.85478 4.00622 4.33203 4.85326 4.94945 4.97848 5.04873 5.14347 5.49489 5.51986 5.66071 5.77100 5.84651 5.93582 6.04283 6.08592 6.10283 6.26682 6.34455 6.40680 6.46147 6.56951 6.77692 6.81387 7.05909 7.38543 7.61358 8.20622 8.73277 9.10055 9.51812 10.13902 10.72515 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033810 B = 0.009965 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.955651 B = 2809.101070 C = 3425.621439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.254 5.254 3 C 0.046 3.954 4 H 0.053 0.947 5 C -0.078 4.078 6 C -0.136 4.136 7 C -0.143 4.143 8 C -0.133 4.133 9 C -0.149 4.149 10 C 0.452 3.548 11 O -0.579 6.579 12 N -0.292 5.292 13 C -0.332 4.332 14 H 0.095 0.905 15 C 0.052 3.948 16 N -0.828 5.828 17 Si 0.913 3.087 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.272 1.272 21 H 0.013 0.987 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 9.322 -5.458 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.069 5.069 3 C -0.062 4.062 4 H 0.071 0.929 5 C -0.097 4.097 6 C -0.174 4.174 7 C -0.180 4.180 8 C -0.170 4.170 9 C -0.190 4.190 10 C 0.238 3.762 11 O -0.461 6.461 12 N -0.098 5.098 13 C -0.460 4.460 14 H 0.112 0.888 15 C -0.157 4.157 16 N -0.461 5.461 17 Si 0.739 3.261 18 H -0.207 1.207 19 H -0.195 1.195 20 H -0.198 1.198 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.060 8.671 -5.588 10.520 hybrid contribution -0.960 -0.232 0.796 1.268 sum -3.020 8.439 -4.792 10.164 Atomic orbital electron populations 1.22959 0.88720 1.04294 0.97959 1.66142 1.07701 1.08092 1.24957 1.23267 0.95484 0.91952 0.95529 0.92923 1.22312 0.98200 0.94924 0.94306 1.22942 0.99877 0.96724 0.97850 1.22819 0.99090 0.98583 0.97545 1.22891 0.97128 0.97467 0.99509 1.22545 0.98412 0.98707 0.99306 1.20441 0.82103 0.87468 0.86191 1.90536 1.53861 1.72252 1.29466 1.43409 1.23173 1.20881 1.22314 1.19280 1.40270 0.93867 0.92581 0.88787 1.25460 0.97635 0.97399 0.95255 1.70123 1.39506 1.33933 1.02563 0.86226 0.80169 0.80940 0.78772 1.20656 1.19479 1.19766 0.96794 0.92394 0.88802 0.88465 0.90450 0.91638 0.90440 0.92030 0.91250 0.90612 0.90216 0.88746 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 8.62 60.07 0.52 0.72 16 2 N -0.25 -5.88 4.54 -111.99 -0.51 -6.39 16 3 C 0.05 0.87 2.41 -65.99 -0.16 0.71 16 4 H 0.05 0.94 7.89 -51.93 -0.41 0.54 16 5 C -0.08 -1.20 3.30 -89.80 -0.30 -1.50 16 6 C -0.14 -1.66 7.60 -25.92 -0.20 -1.86 16 7 C -0.14 -1.63 8.08 -25.92 -0.21 -1.84 16 8 C -0.13 -1.82 6.39 -25.92 -0.17 -1.99 16 9 C -0.15 -2.98 6.62 -26.39 -0.17 -3.16 16 10 C 0.45 11.92 8.10 -10.52 -0.09 11.83 16 11 O -0.58 -17.16 17.73 5.55 0.10 -17.06 16 12 N -0.29 -7.82 3.04 -10.64 -0.03 -7.85 16 13 C -0.33 -9.34 8.82 -14.93 -0.13 -9.47 16 14 H 0.09 2.71 7.86 -52.48 -0.41 2.30 16 15 C 0.05 1.36 3.92 -17.47 -0.07 1.29 16 16 N -0.83 -22.26 11.41 55.50 0.63 -21.63 16 17 Si 0.91 20.24 29.57 -169.99 -5.03 15.22 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.06 1.06 5.98 -51.93 -0.31 0.75 16 23 H 0.09 2.23 5.24 -51.93 -0.27 1.96 16 24 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 25 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.03 7.32 -51.93 -0.38 0.65 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.09 1.78 7.91 -51.93 -0.41 1.37 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 267.07 15.07 4.02 4.02 Total: -1.00 -31.27 267.07 -6.49 -37.76 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.71 Total: 1.17 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.97 Total: -5.25 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.09 Total: -35.86 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.10 Total: -17.06 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.27 -6.49 -37.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.868 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds