Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47951 * 111.06109 * 2 1 4 4 H 1.08999 * 110.76897 * 330.24624 * 3 2 1 5 5 C 1.53005 * 111.09388 * 93.89080 * 3 2 1 6 6 C 1.53002 * 117.49581 * 242.74003 * 5 3 2 7 7 C 1.52995 * 117.49992 * 174.11708 * 5 3 2 8 8 C 1.54798 * 101.95458 * 212.14148 * 3 2 1 9 9 C 1.51816 * 102.22713 * 23.78832 * 8 3 2 10 10 O 1.21276 * 126.03325 * 165.15633 * 9 8 3 11 11 N 1.34587 * 107.92186 * 345.18206 * 9 8 3 12 12 C 1.46506 * 123.52202 * 178.40460 * 11 9 8 13 13 C 1.50696 * 109.46871 * 275.01866 * 12 11 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46839 * 299.97500 * 1 2 3 23 23 H 1.08998 * 109.47486 * 59.97327 * 1 2 3 24 24 H 1.09001 * 115.54660 * 28.44221 * 5 3 2 25 25 H 1.08995 * 117.50468 * 359.97438 * 6 5 3 26 26 H 1.09003 * 117.49634 * 145.02011 * 6 5 3 27 27 H 1.09004 * 117.50158 * 214.97864 * 7 5 3 28 28 H 1.09002 * 117.50052 * 359.97438 * 7 5 3 29 29 H 1.08996 * 110.84690 * 265.61049 * 8 3 2 30 30 H 1.08997 * 111.03079 * 142.05197 * 8 3 2 31 31 H 1.09005 * 109.46943 * 155.02186 * 12 11 9 32 32 H 1.09002 * 109.47064 * 35.02449 * 12 11 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0007 1.3807 0.0000 4 1 1.3139 2.0593 -0.5058 5 6 2.2890 1.8597 1.4242 6 6 1.4931 3.0602 1.9404 7 6 2.9734 3.2183 1.5877 8 6 3.3126 1.2191 -0.8057 9 6 3.0328 -0.0251 -1.6294 10 8 3.6662 -0.3998 -2.5934 11 7 1.9575 -0.6384 -1.1012 12 6 1.3698 -1.8607 -1.6552 13 6 0.4060 -1.5003 -2.7561 14 1 0.2473 -0.4644 -3.0173 15 6 -0.2735 -2.4930 -3.4299 16 7 -1.1143 -2.1785 -4.3911 17 14 0.0004 -4.2846 -2.9776 18 1 1.1125 -4.8365 -3.7925 19 1 0.3457 -4.3842 -1.5368 20 1 -1.2394 -5.0574 -3.2441 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 2.5434 1.0785 2.1405 25 1 0.7644 3.5089 1.2654 26 1 1.2237 3.0688 2.9966 27 1 3.6780 3.3310 2.4117 28 1 3.2188 3.7706 0.6806 29 1 4.1602 1.0605 -0.1390 30 1 3.4842 2.0809 -1.4506 31 1 0.8390 -2.3974 -0.8688 32 1 2.1605 -2.4941 -2.0574 33 1 -1.5919 -2.8769 -4.8653 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260655712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = 37.161113 kcal Electronic energy + Delta-G solvation = -15851.135530 eV Core-core repulsion = 13300.374796 eV Total energy + Delta-G solvation = -2550.760734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48776 -37.43756 -36.29484 -33.30656 -31.54478 -30.86801 -27.94140 -25.11774 -23.46676 -22.56390 -21.95956 -20.25021 -19.08570 -17.08571 -16.43673 -16.03234 -15.56680 -14.83061 -14.29110 -13.78362 -13.66658 -13.19135 -13.05926 -12.70076 -12.51054 -11.95246 -11.75288 -11.60933 -11.42676 -11.18912 -10.98075 -10.66288 -10.40869 -10.36932 -10.09465 -9.85902 -9.26699 -9.02478 -8.67827 -7.13013 -6.18096 -4.19225 3.09883 3.24040 3.30240 3.32274 3.45956 3.74090 4.31452 4.40553 4.71080 4.79395 4.96450 5.05743 5.15269 5.18147 5.32093 5.49786 5.55864 5.78496 5.81802 5.93579 6.03606 6.06238 6.08863 6.20644 6.47513 6.59582 6.66330 6.84001 7.45213 7.63287 8.33489 8.43844 8.80911 8.98305 9.40719 10.94669 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040709 B = 0.007965 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.639048 B = 3514.615340 C = 3800.607668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.284 5.284 3 C 0.077 3.923 4 H 0.069 0.931 5 C -0.126 4.126 6 C -0.181 4.181 7 C -0.176 4.176 8 C -0.153 4.153 9 C 0.506 3.494 10 O -0.531 6.531 11 N -0.449 5.449 12 C 0.229 3.771 13 C -0.539 4.539 14 H 0.073 0.927 15 C 0.076 3.924 16 N -0.892 5.892 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.263 1.263 20 H -0.283 1.283 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 8.113 13.312 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 N -0.100 5.100 3 C -0.031 4.031 4 H 0.087 0.913 5 C -0.145 4.145 6 C -0.218 4.218 7 C -0.213 4.213 8 C -0.194 4.194 9 C 0.291 3.709 10 O -0.406 6.406 11 N -0.269 5.269 12 C 0.109 3.891 13 C -0.577 4.577 14 H 0.091 0.909 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.701 3.299 18 H -0.197 1.197 19 H -0.188 1.188 20 H -0.208 1.208 21 H 0.103 0.897 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.135 0.865 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.750 7.459 13.043 15.758 hybrid contribution -0.513 -0.399 -0.579 0.870 sum 4.238 7.060 12.464 14.938 Atomic orbital electron populations 1.23004 0.86849 1.04199 1.01047 1.65735 1.09186 1.11747 1.23298 1.22611 0.95535 0.90509 0.94461 0.91307 1.21994 1.04620 0.91541 0.96388 1.23038 0.94476 1.02440 1.01836 1.22943 0.95472 0.99581 1.03315 1.22694 0.98735 0.98612 0.99382 1.20703 0.81247 0.85424 0.83528 1.90692 1.53368 1.70102 1.26468 1.48277 1.28069 1.25287 1.25314 1.19767 0.94376 0.80798 0.94158 1.21326 1.23359 0.95800 1.17259 0.90892 1.24832 0.94477 0.99045 0.94350 1.69890 1.27028 1.33577 1.22517 0.86862 0.78215 0.85080 0.79716 1.19721 1.18782 1.20841 0.89743 0.90974 0.93453 0.86549 0.88858 0.88761 0.88635 0.88733 0.87547 0.88514 0.94104 0.94073 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 8.67 60.07 0.52 0.48 16 2 N -0.28 -5.07 5.48 -112.25 -0.62 -5.68 16 3 C 0.08 1.13 2.90 -66.18 -0.19 0.93 16 4 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 5 C -0.13 -1.42 5.45 -90.62 -0.49 -1.91 16 6 C -0.18 -1.70 10.19 -26.73 -0.27 -1.98 16 7 C -0.18 -1.59 9.99 -26.73 -0.27 -1.86 16 8 C -0.15 -2.39 6.42 -26.38 -0.17 -2.56 16 9 C 0.51 11.06 8.15 -10.52 -0.09 10.97 16 10 O -0.53 -13.72 17.68 5.56 0.10 -13.62 16 11 N -0.45 -9.85 3.05 -61.10 -0.19 -10.04 16 12 C 0.23 5.65 3.92 -5.19 -0.02 5.63 16 13 C -0.54 -15.28 9.20 -34.44 -0.32 -15.59 16 14 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -27.10 13.96 55.43 0.77 -26.32 16 17 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.08 1.57 6.79 -51.93 -0.35 1.22 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.91 7.98 -51.93 -0.41 0.50 16 24 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 1.44 7.91 -51.93 -0.41 1.03 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.04 0.96 6.22 -51.93 -0.32 0.64 16 32 H 0.04 1.07 7.45 -51.93 -0.39 0.68 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -32.57 276.06 -6.66 -39.23 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.83 Total: -0.40 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.39 Total: -3.79 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.03 Total: -42.04 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.10 Total: -13.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.57 -6.66 -39.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260655712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.394 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds