Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47951 * 111.06109 * 2 1 4 4 H 1.08999 * 110.76897 * 330.24624 * 3 2 1 5 5 C 1.53005 * 111.09388 * 93.89080 * 3 2 1 6 6 C 1.53002 * 117.49581 * 242.74003 * 5 3 2 7 7 C 1.52995 * 117.49992 * 174.11708 * 5 3 2 8 8 C 1.54798 * 101.95458 * 212.14148 * 3 2 1 9 9 C 1.51816 * 102.22713 * 23.78832 * 8 3 2 10 10 O 1.21276 * 126.03325 * 165.15633 * 9 8 3 11 11 N 1.34587 * 107.92186 * 345.18206 * 9 8 3 12 12 C 1.46506 * 123.52202 * 178.40460 * 11 9 8 13 13 C 1.50696 * 109.46871 * 275.01866 * 12 11 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46839 * 299.97500 * 1 2 3 23 23 H 1.08998 * 109.47486 * 59.97327 * 1 2 3 24 24 H 1.09001 * 115.54660 * 28.44221 * 5 3 2 25 25 H 1.08995 * 117.50468 * 359.97438 * 6 5 3 26 26 H 1.09003 * 117.49634 * 145.02011 * 6 5 3 27 27 H 1.09004 * 117.50158 * 214.97864 * 7 5 3 28 28 H 1.09002 * 117.50052 * 359.97438 * 7 5 3 29 29 H 1.08996 * 110.84690 * 265.61049 * 8 3 2 30 30 H 1.08997 * 111.03079 * 142.05197 * 8 3 2 31 31 H 1.09005 * 109.46943 * 155.02186 * 12 11 9 32 32 H 1.09002 * 109.47064 * 35.02449 * 12 11 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0007 1.3807 0.0000 4 1 1.3139 2.0593 -0.5058 5 6 2.2890 1.8597 1.4242 6 6 1.4931 3.0602 1.9404 7 6 2.9734 3.2183 1.5877 8 6 3.3126 1.2191 -0.8057 9 6 3.0328 -0.0251 -1.6294 10 8 3.6662 -0.3998 -2.5934 11 7 1.9575 -0.6384 -1.1012 12 6 1.3698 -1.8607 -1.6552 13 6 0.4060 -1.5003 -2.7561 14 1 0.2473 -0.4644 -3.0173 15 6 -0.2735 -2.4930 -3.4299 16 7 -1.1143 -2.1785 -4.3911 17 14 0.0004 -4.2846 -2.9776 18 1 1.1125 -4.8365 -3.7925 19 1 0.3457 -4.3842 -1.5368 20 1 -1.2394 -5.0574 -3.2441 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 2.5434 1.0785 2.1405 25 1 0.7644 3.5089 1.2654 26 1 1.2237 3.0688 2.9966 27 1 3.6780 3.3310 2.4117 28 1 3.2188 3.7706 0.6806 29 1 4.1602 1.0605 -0.1390 30 1 3.4842 2.0809 -1.4506 31 1 0.8390 -2.3974 -0.8688 32 1 2.1605 -2.4941 -2.0574 33 1 -1.5919 -2.8769 -4.8653 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260655712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = 14.140743 kcal Electronic energy + Delta-G solvation = -15852.133768 eV Core-core repulsion = 13300.374796 eV Total energy + Delta-G solvation = -2551.758972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.00861 -38.74272 -37.68256 -35.31499 -33.31123 -32.37767 -29.79076 -26.45614 -25.21045 -23.83808 -23.02128 -21.32938 -20.70628 -19.24167 -17.97649 -17.58987 -16.88056 -16.38655 -15.86786 -15.33548 -15.15717 -14.70320 -14.61102 -14.24918 -14.14688 -13.74144 -13.18737 -12.93069 -12.75354 -12.63295 -12.30021 -12.28822 -12.10141 -11.84609 -11.19914 -11.16424 -11.07216 -10.88428 -10.58247 -8.79701 -8.40462 -6.48675 1.31056 1.34578 1.42690 1.46945 1.84926 2.26104 2.86413 2.93070 3.16583 3.44383 3.70877 3.94716 4.05535 4.18124 4.32337 4.41887 4.49063 4.55790 4.69544 4.72381 4.78283 4.88606 4.91609 5.03147 5.13685 5.15197 5.30978 5.38349 5.44015 5.89410 6.19255 6.50826 6.77543 7.11154 7.31146 8.75689 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040709 B = 0.007965 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.639048 B = 3514.615340 C = 3800.607668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.282 5.282 3 C 0.083 3.917 4 H 0.065 0.935 5 C -0.139 4.139 6 C -0.174 4.174 7 C -0.160 4.160 8 C -0.137 4.137 9 C 0.485 3.515 10 O -0.584 6.584 11 N -0.460 5.460 12 C 0.237 3.763 13 C -0.543 4.543 14 H 0.025 0.975 15 C 0.018 3.982 16 N -0.939 5.939 17 Si 0.946 3.054 18 H -0.272 1.272 19 H -0.237 1.237 20 H -0.272 1.272 21 H 0.068 0.932 22 H 0.113 0.887 23 H 0.017 0.983 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 8.442 16.077 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.099 5.099 3 C -0.025 4.025 4 H 0.083 0.917 5 C -0.158 4.158 6 C -0.211 4.211 7 C -0.198 4.198 8 C -0.177 4.177 9 C 0.272 3.728 10 O -0.463 6.463 11 N -0.278 5.278 12 C 0.115 3.885 13 C -0.581 4.581 14 H 0.043 0.957 15 C -0.181 4.181 16 N -0.579 5.579 17 Si 0.768 3.232 18 H -0.198 1.198 19 H -0.160 1.160 20 H -0.197 1.197 21 H 0.087 0.913 22 H 0.132 0.868 23 H 0.035 0.965 24 H 0.137 0.863 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.419 7.821 15.850 18.487 hybrid contribution -0.753 -0.369 -1.449 1.674 sum 4.666 7.452 14.401 16.873 Atomic orbital electron populations 1.22974 0.86567 1.03329 1.01548 1.65798 1.09305 1.13856 1.20902 1.22763 0.94448 0.88427 0.96891 0.91668 1.21851 1.07340 0.92649 0.93941 1.23129 0.94838 1.00510 1.02653 1.23067 0.95654 0.97002 1.04043 1.22746 1.00253 0.95676 0.99048 1.21841 0.80644 0.86966 0.83310 1.90642 1.54975 1.71787 1.28887 1.48365 1.28239 1.25115 1.26089 1.19452 0.93170 0.82347 0.93513 1.21427 1.24377 0.93689 1.18654 0.95688 1.25815 0.93869 1.04437 0.94003 1.70035 1.28323 1.35514 1.23979 0.85736 0.78351 0.78264 0.80834 1.19784 1.15987 1.19664 0.91336 0.86824 0.96461 0.86256 0.89108 0.87168 0.86731 0.88415 0.84723 0.86686 0.92341 0.95328 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.15 8.67 127.69 1.11 1.25 16 2 N -0.28 -9.78 5.48 -509.05 -2.79 -12.57 16 3 C 0.08 2.24 2.90 45.33 0.13 2.37 16 4 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 5 C -0.14 -2.62 5.45 -10.79 -0.06 -2.68 16 6 C -0.17 -2.62 10.19 30.60 0.31 -2.31 16 7 C -0.16 -2.24 9.99 30.59 0.31 -1.93 16 8 C -0.14 -4.02 6.42 30.82 0.20 -3.82 16 9 C 0.48 21.38 8.15 88.04 0.72 22.10 16 10 O -0.58 -31.07 17.68 -3.02 -0.05 -31.12 16 11 N -0.46 -20.31 3.05 -465.73 -1.42 -21.73 16 12 C 0.24 11.81 3.92 85.63 0.34 12.14 16 13 C -0.54 -31.95 9.20 25.60 0.24 -31.72 16 14 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 15 C 0.02 1.05 5.47 84.66 0.46 1.51 16 16 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 17 Si 0.95 43.68 27.47 68.60 1.88 45.56 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H 0.07 2.53 6.79 -2.39 -0.02 2.51 16 22 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 23 H 0.02 0.67 7.98 -2.39 -0.02 0.65 16 24 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.11 1.22 8.14 -2.38 -0.02 1.21 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.13 3.21 7.91 -2.39 -0.02 3.20 16 30 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.06 2.70 6.22 -2.38 -0.01 2.68 16 32 H 0.03 1.50 7.45 -2.39 -0.02 1.48 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -74.28 276.06 2.70 -71.58 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.03 Total: 9.88 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 3.75 Total: -3.07 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -3.91 Total: -92.83 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.05 Total: -31.12 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -74.28 2.70 -71.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260655712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.720 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds