Wall clock time and date at job start Mon Mar 30 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 N 1.36642 * 110.99975 * 2 1 4 4 C 1.37101 * 123.51585 * 75.61748 * 3 2 1 5 5 H 1.08003 * 119.99889 * 190.65141 * 4 3 2 6 6 C 1.38955 * 119.99731 * 10.65622 * 4 3 2 7 7 N 1.31408 * 120.00102 * 8.20156 * 6 4 3 8 8 Si 1.86798 * 119.99471 * 188.20115 * 6 4 3 9 9 H 1.48499 * 109.47392 * 60.00347 * 8 6 4 10 10 H 1.48502 * 109.46866 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47511 * 299.99804 * 8 6 4 12 12 C 1.34717 * 112.97000 * 255.59659 * 3 2 1 13 13 O 1.21288 * 126.04030 * 178.66244 * 12 3 2 14 14 C 1.52045 * 107.91802 * 358.66040 * 12 3 2 15 15 C 1.46950 * 111.00394 * 240.35262 * 2 1 3 16 16 C 1.53197 * 111.61751 * 216.12698 * 15 2 1 17 17 C 1.55144 * 103.91284 * 100.27829 * 16 15 2 18 18 C 1.54992 * 102.88841 * 37.00511 * 17 16 15 19 19 C 1.52799 * 111.85504 * 336.93995 * 15 2 1 20 20 H 1.09006 * 109.46982 * 71.23677 * 1 2 3 21 21 H 1.09001 * 109.47238 * 191.22952 * 1 2 3 22 22 H 1.08993 * 109.47671 * 311.23740 * 1 2 3 23 23 H 0.97003 * 119.99799 * 179.97438 * 7 6 4 24 24 H 1.08996 * 110.93256 * 104.16263 * 14 12 3 25 25 H 1.08999 * 110.93264 * 227.82588 * 14 12 3 26 26 H 1.08999 * 110.54079 * 218.88914 * 16 15 2 27 27 H 1.09002 * 110.53958 * 341.67683 * 16 15 2 28 28 H 1.08995 * 110.73115 * 278.65383 * 17 16 15 29 29 H 1.08997 * 110.72634 * 155.35099 * 17 16 15 30 30 H 1.09004 * 110.47969 * 203.96844 * 18 17 16 31 31 H 1.08995 * 110.59356 * 81.39417 * 18 17 16 32 32 H 1.09002 * 110.11495 * 355.82282 * 19 15 2 33 33 H 1.08996 * 110.11869 * 117.41492 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 7 1.9586 1.2757 0.0000 4 6 1.9648 2.0842 1.1072 5 1 2.2033 3.1329 1.0087 6 6 1.6644 1.5542 2.3561 7 7 1.5330 0.2551 2.5043 8 14 1.4474 2.6885 3.8243 9 1 0.3339 3.6345 3.5588 10 1 1.1337 1.8818 5.0310 11 1 2.7015 3.4511 4.0504 12 6 2.4350 1.6559 -1.2014 13 8 2.9014 2.7422 -1.4728 14 6 2.2849 0.4827 -2.1568 15 6 1.9956 -0.6786 -1.1923 16 6 3.2718 -1.4650 -0.8765 17 6 2.7819 -2.9304 -0.7361 18 6 1.6818 -3.0327 -1.8231 19 6 0.9813 -1.6554 -1.7855 20 1 -0.3633 0.3306 -0.9731 21 1 -0.3634 -1.0080 0.2001 22 1 -0.3634 0.6773 0.7727 23 1 1.3236 -0.1148 3.3763 24 1 1.4492 0.6401 -2.8385 25 1 3.2086 0.3095 -2.7089 26 1 3.9872 -1.3776 -1.6942 27 1 3.7133 -1.1184 0.0579 28 1 2.3625 -3.1038 0.2548 29 1 3.5927 -3.6295 -0.9409 30 1 0.9759 -3.8263 -1.5778 31 1 2.1260 -3.2080 -2.8028 32 1 0.0938 -1.7033 -1.1545 33 1 0.7077 -1.3453 -2.7939 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260693767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:55 Heat of formation + Delta-G solvation = 25.293696 kcal Electronic energy + Delta-G solvation = -16662.838386 eV Core-core repulsion = 14111.563043 eV Total energy + Delta-G solvation = -2551.275344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53940 -36.96779 -35.30239 -32.72271 -30.52202 -30.04903 -28.22076 -25.70786 -24.81804 -23.12737 -20.41234 -19.72827 -18.62183 -17.11373 -15.66407 -15.58130 -14.57608 -14.43425 -14.21953 -13.66828 -13.37871 -13.14994 -12.62765 -12.33720 -11.78915 -11.60512 -11.22034 -11.13120 -10.96250 -10.82776 -10.58899 -10.53264 -10.35185 -10.31502 -10.19514 -9.95597 -9.44075 -8.61999 -8.12474 -6.99057 -6.11244 -3.77839 3.19943 3.26401 3.29466 3.81393 4.02949 4.38717 4.89745 4.97496 5.15178 5.23491 5.46146 5.54890 5.67668 5.75047 5.85765 6.00804 6.12985 6.16362 6.20067 6.23003 6.31375 6.36420 6.41851 6.54120 6.73941 6.82892 6.87662 6.92577 7.51343 7.74807 8.15567 8.70613 9.13638 9.62506 10.10207 10.83029 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031785 B = 0.011571 C = 0.009768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.711126 B = 2419.252321 C = 2865.670545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.230 5.230 3 N -0.284 5.284 4 C -0.321 4.321 5 H 0.105 0.895 6 C 0.046 3.954 7 N -0.822 5.822 8 Si 0.915 3.085 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.419 3.581 13 O -0.586 6.586 14 C -0.173 4.173 15 C 0.078 3.922 16 C -0.097 4.097 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.130 4.130 20 H 0.007 0.993 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.262 0.738 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -8.089 -4.538 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.045 5.045 3 N -0.090 5.090 4 C -0.448 4.448 5 H 0.123 0.877 6 C -0.162 4.162 7 N -0.456 5.456 8 Si 0.741 3.259 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.206 3.794 13 O -0.470 6.470 14 C -0.215 4.215 15 C -0.013 4.013 16 C -0.135 4.135 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.168 4.168 20 H 0.025 0.975 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.978 -7.910 -3.955 9.063 hybrid contribution -0.539 0.779 0.013 0.948 sum -2.517 -7.131 -3.942 8.528 Atomic orbital electron populations 1.22852 0.89568 1.01624 0.98878 1.64993 1.06145 1.00214 1.33107 1.43764 1.49030 1.07828 1.08406 1.19449 1.49838 0.92117 0.83417 0.87706 1.25264 0.96895 0.95915 0.98169 1.70202 1.42350 1.09651 1.23375 0.86202 0.79106 0.79951 0.80613 1.20017 1.20848 1.19800 1.20788 0.85727 0.89027 0.83855 1.90517 1.52294 1.24627 1.79580 1.22885 1.03276 0.96848 0.98505 1.22232 0.96292 0.93642 0.89095 1.22125 0.95107 0.94028 1.02263 1.22488 0.97399 0.96357 0.99244 1.22358 0.97897 0.96534 0.98899 1.22562 0.99016 0.94542 1.00709 0.97493 0.91246 0.90538 0.92789 0.90068 0.89105 0.92094 0.89808 0.90822 0.92393 0.92106 0.92201 0.89500 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 7.83 60.06 0.47 0.87 16 2 N -0.23 -5.29 3.43 -106.78 -0.37 -5.66 16 3 N -0.28 -7.54 2.76 -10.54 -0.03 -7.57 16 4 C -0.32 -9.04 9.49 -14.93 -0.14 -9.18 16 5 H 0.11 3.05 7.71 -52.48 -0.40 2.65 16 6 C 0.05 1.21 4.87 -17.47 -0.08 1.12 16 7 N -0.82 -21.52 11.04 55.50 0.61 -20.90 16 8 Si 0.92 20.40 29.56 -169.99 -5.02 15.37 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 C 0.42 11.00 8.12 -10.35 -0.08 10.92 16 13 O -0.59 -17.35 17.63 5.55 0.10 -17.25 16 14 C -0.17 -3.51 6.12 -26.85 -0.16 -3.67 16 15 C 0.08 1.48 0.87 -131.21 -0.11 1.37 16 16 C -0.10 -1.74 6.16 -25.49 -0.16 -1.90 16 17 C -0.12 -1.74 6.92 -24.54 -0.17 -1.91 16 18 C -0.12 -1.57 6.85 -24.86 -0.17 -1.74 16 19 C -0.13 -1.99 5.43 -26.01 -0.14 -2.13 16 20 H 0.01 0.13 7.63 -51.93 -0.40 -0.27 16 21 H 0.07 1.29 6.53 -51.93 -0.34 0.95 16 22 H 0.08 1.78 7.04 -51.93 -0.37 1.42 16 23 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 24 H 0.08 1.50 7.56 -51.93 -0.39 1.11 16 25 H 0.09 1.69 7.48 -51.93 -0.39 1.30 16 26 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 27 H 0.08 1.78 8.05 -51.93 -0.42 1.36 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.35 4.82 -51.93 -0.25 1.10 16 33 H 0.06 0.88 7.40 -51.93 -0.38 0.50 16 LS Contribution 260.99 15.07 3.93 3.93 Total: -1.00 -30.86 260.99 -6.09 -36.95 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.55 Total: 1.38 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.76 Total: -6.25 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.22 Total: -34.13 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.10 Total: -17.25 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.86 -6.09 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260693767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.246 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds