Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34874 * 126.16216 * 2 1 4 4 O 1.21785 * 126.19260 * 359.70445 * 3 2 1 5 5 C 1.41471 * 107.61334 * 179.97438 * 3 2 1 6 6 C 1.34828 * 108.08539 * 0.02562 * 5 3 2 7 7 C 1.50698 * 125.77562 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.47238 * 119.97059 * 7 6 5 9 9 C 1.53004 * 109.46906 * 239.97344 * 7 6 5 10 10 C 1.50704 * 109.47064 * 359.97340 * 7 6 5 11 11 H 1.08002 * 119.99954 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99708 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00192 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99847 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46714 * 60.00309 * 14 12 10 16 16 H 1.48497 * 109.47088 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47251 * 300.00602 * 14 12 10 18 18 N 1.36607 * 108.44751 * 359.97438 * 6 5 3 19 19 C 1.46502 * 125.90474 * 180.02562 * 18 6 5 20 20 H 1.08991 * 109.47263 * 0.02564 * 1 2 3 21 21 H 1.09005 * 109.46999 * 120.02495 * 1 2 3 22 22 H 1.09001 * 109.46784 * 240.02204 * 1 2 3 23 23 H 1.07998 * 125.96110 * 179.97438 * 5 3 2 24 24 H 1.09006 * 109.46944 * 60.00328 * 8 7 6 25 25 H 1.09003 * 109.47371 * 179.97438 * 8 7 6 26 26 H 1.08999 * 109.47646 * 299.99963 * 8 7 6 27 27 H 1.08997 * 109.46635 * 60.00229 * 9 7 6 28 28 H 1.09003 * 109.46940 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.46814 * 299.99602 * 9 7 6 30 30 H 0.97002 * 119.99618 * 180.02562 * 13 12 10 31 31 H 1.09004 * 109.46764 * 180.02562 * 19 18 6 32 32 H 1.08997 * 109.47075 * 300.02501 * 19 18 6 33 33 H 1.09005 * 109.46902 * 60.02637 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2609 1.0889 0.0000 4 8 1.8918 2.2494 -0.0051 5 6 3.6021 0.6389 0.0006 6 6 3.5912 -0.7094 0.0004 7 6 4.8067 -1.6002 0.0014 8 6 4.7909 -2.4831 1.2508 9 6 4.7924 -2.4837 -1.2477 10 6 6.0518 -0.7512 0.0021 11 1 5.9710 0.3258 0.0022 12 6 7.2940 -1.3494 0.0025 13 7 7.3924 -2.6608 0.0018 14 14 8.8374 -0.2970 0.0026 15 1 8.8517 0.5605 1.2149 16 1 10.0351 -1.1748 0.0037 17 1 8.8522 0.5601 -1.2101 18 7 2.2919 -1.1311 0.0002 19 6 1.8411 -2.5251 0.0005 20 1 -0.3633 1.0276 -0.0005 21 1 -0.3633 -0.5142 -0.8898 22 1 -0.3633 -0.5135 0.8902 23 1 4.4815 1.2659 0.0004 24 1 3.8903 -3.0973 1.2504 25 1 5.6698 -3.1278 1.2514 26 1 4.8010 -1.8538 2.1407 27 1 4.8038 -1.8546 -2.1377 28 1 5.6719 -3.1278 -1.2472 29 1 3.8919 -3.0978 -1.2481 30 1 8.2664 -3.0815 0.0025 31 1 0.7515 -2.5545 -0.0001 32 1 2.2187 -3.0292 -0.8890 33 1 2.2177 -3.0285 0.8910 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260695305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = 49.600837 kcal Electronic energy + Delta-G solvation = -16140.462071 eV Core-core repulsion = 13590.240764 eV Total energy + Delta-G solvation = -2550.221307 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89604 -36.92416 -35.38945 -32.55069 -31.68519 -30.71458 -26.44949 -25.91796 -25.29063 -25.12994 -21.34708 -20.29983 -18.46569 -16.76149 -16.07215 -15.73454 -14.87847 -14.63845 -14.17732 -13.71943 -13.37178 -12.93380 -12.87268 -12.50742 -12.39053 -12.27244 -12.04542 -11.24423 -11.09460 -10.71087 -10.70618 -10.52713 -10.31504 -9.94692 -9.94535 -8.99363 -8.87077 -8.50322 -8.33392 -7.00227 -6.10470 -4.18877 2.11491 2.51281 3.31389 3.34562 3.40030 4.10555 4.18065 4.37819 4.96044 5.19022 5.22952 5.32881 5.43381 5.51022 5.63610 5.70111 6.30482 6.43645 6.58102 6.61850 6.65829 6.76336 6.86900 7.15552 7.25440 7.35033 7.57115 7.78086 7.81641 8.05062 8.09732 8.31039 8.81714 8.97795 9.47273 10.92392 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.009507 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.341255 B = 2944.479567 C = 3529.450803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.436 5.436 3 C 0.528 3.472 4 O -0.581 6.581 5 C -0.361 4.361 6 C 0.238 3.762 7 C 0.118 3.882 8 C -0.135 4.135 9 C -0.135 4.135 10 C -0.504 4.504 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.275 1.275 18 N -0.407 5.407 19 C 0.102 3.898 20 H 0.099 0.901 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.161 0.839 24 H 0.014 0.986 25 H 0.095 0.905 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.096 0.904 29 H 0.014 0.986 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 -3.974 0.010 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.257 5.257 3 C 0.330 3.670 4 O -0.464 6.464 5 C -0.390 4.390 6 C 0.124 3.876 7 C 0.116 3.884 8 C -0.192 4.192 9 C -0.193 4.193 10 C -0.542 4.542 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.202 5.202 19 C -0.039 4.039 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.178 0.822 24 H 0.033 0.967 25 H 0.114 0.886 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.114 0.886 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.502 -3.681 0.006 10.190 hybrid contribution 0.625 0.384 0.003 0.734 sum -8.877 -3.297 0.009 9.470 Atomic orbital electron populations 1.21622 0.76362 1.04531 1.01198 1.48352 1.03342 0.99861 1.74162 1.17268 0.87526 0.83242 0.78992 1.90752 1.80963 1.16283 1.58421 1.21709 0.96548 0.94586 1.26202 1.22132 0.82896 0.95564 0.87040 1.17245 0.86260 0.91174 0.93759 1.21945 1.00870 0.99427 0.97005 1.21946 1.00878 0.99435 0.97003 1.21042 0.88758 0.93281 1.51113 0.91135 1.24858 0.98973 0.95070 0.94545 1.69765 1.24274 1.08300 1.50480 0.86531 0.81796 0.80097 0.78950 1.20081 1.21323 1.20075 1.46364 1.01177 0.98742 1.73943 1.22090 1.00258 0.77585 1.04004 0.88276 0.92151 0.92157 0.82192 0.96720 0.88612 0.94851 0.94856 0.88595 0.96715 0.92736 0.90843 0.90090 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 10.55 59.85 0.63 2.00 16 2 N -0.44 -8.09 4.02 -70.06 -0.28 -8.38 16 3 C 0.53 12.00 7.95 -14.98 -0.12 11.88 16 4 O -0.58 -14.57 17.65 5.11 0.09 -14.48 16 5 C -0.36 -8.37 9.85 -39.56 -0.39 -8.76 16 6 C 0.24 5.12 5.48 -81.68 -0.45 4.68 16 7 C 0.12 2.65 0.51 -156.81 -0.08 2.57 16 8 C -0.13 -2.88 8.14 37.16 0.30 -2.58 16 9 C -0.13 -2.88 8.14 37.16 0.30 -2.58 16 10 C -0.50 -12.75 7.77 -34.44 -0.27 -13.02 16 11 H 0.07 1.82 5.61 -52.49 -0.29 1.53 16 12 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 13 N -0.89 -22.59 9.35 55.43 0.52 -22.07 16 14 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 N -0.41 -7.38 4.06 -63.60 -0.26 -7.64 16 19 C 0.10 1.35 9.85 59.85 0.59 1.94 16 20 H 0.10 1.31 7.75 -51.93 -0.40 0.91 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.16 3.81 6.34 -52.49 -0.33 3.47 16 24 H 0.01 0.26 5.29 -51.93 -0.27 -0.02 16 25 H 0.10 2.23 6.07 -51.93 -0.32 1.92 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.24 6.07 -51.93 -0.32 1.92 16 29 H 0.01 0.26 5.29 -51.93 -0.27 -0.02 16 30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.07 0.74 7.40 -51.93 -0.38 0.36 16 32 H 0.08 1.04 5.98 -51.93 -0.31 0.73 16 33 H 0.08 1.04 5.98 -51.93 -0.31 0.73 16 LS Contribution 261.96 15.07 3.95 3.95 Total: -1.00 -30.04 261.96 -4.61 -34.65 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.04 Total: 0.93 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 0.43 Total: -2.27 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.02 Total: -38.09 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.09 Total: -14.48 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.04 -4.61 -34.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.255 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds