Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34874 * 126.16216 * 2 1 4 4 O 1.21785 * 126.19260 * 359.70445 * 3 2 1 5 5 C 1.41471 * 107.61334 * 179.97438 * 3 2 1 6 6 C 1.34828 * 108.08539 * 0.02562 * 5 3 2 7 7 C 1.50698 * 125.77562 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.47238 * 119.97059 * 7 6 5 9 9 C 1.53004 * 109.46906 * 239.97344 * 7 6 5 10 10 C 1.50704 * 109.47064 * 359.97340 * 7 6 5 11 11 H 1.08002 * 119.99954 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99708 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00192 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99847 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46714 * 60.00309 * 14 12 10 16 16 H 1.48497 * 109.47088 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47251 * 300.00602 * 14 12 10 18 18 N 1.36607 * 108.44751 * 359.97438 * 6 5 3 19 19 C 1.46502 * 125.90474 * 180.02562 * 18 6 5 20 20 H 1.08991 * 109.47263 * 0.02564 * 1 2 3 21 21 H 1.09005 * 109.46999 * 120.02495 * 1 2 3 22 22 H 1.09001 * 109.46784 * 240.02204 * 1 2 3 23 23 H 1.07998 * 125.96110 * 179.97438 * 5 3 2 24 24 H 1.09006 * 109.46944 * 60.00328 * 8 7 6 25 25 H 1.09003 * 109.47371 * 179.97438 * 8 7 6 26 26 H 1.08999 * 109.47646 * 299.99963 * 8 7 6 27 27 H 1.08997 * 109.46635 * 60.00229 * 9 7 6 28 28 H 1.09003 * 109.46940 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.46814 * 299.99602 * 9 7 6 30 30 H 0.97002 * 119.99618 * 180.02562 * 13 12 10 31 31 H 1.09004 * 109.46764 * 180.02562 * 19 18 6 32 32 H 1.08997 * 109.47075 * 300.02501 * 19 18 6 33 33 H 1.09005 * 109.46902 * 60.02637 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2609 1.0889 0.0000 4 8 1.8918 2.2494 -0.0051 5 6 3.6021 0.6389 0.0006 6 6 3.5912 -0.7094 0.0004 7 6 4.8067 -1.6002 0.0014 8 6 4.7909 -2.4831 1.2508 9 6 4.7924 -2.4837 -1.2477 10 6 6.0518 -0.7512 0.0021 11 1 5.9710 0.3258 0.0022 12 6 7.2940 -1.3494 0.0025 13 7 7.3924 -2.6608 0.0018 14 14 8.8374 -0.2970 0.0026 15 1 8.8517 0.5605 1.2149 16 1 10.0351 -1.1748 0.0037 17 1 8.8522 0.5601 -1.2101 18 7 2.2919 -1.1311 0.0002 19 6 1.8411 -2.5251 0.0005 20 1 -0.3633 1.0276 -0.0005 21 1 -0.3633 -0.5142 -0.8898 22 1 -0.3633 -0.5135 0.8902 23 1 4.4815 1.2659 0.0004 24 1 3.8903 -3.0973 1.2504 25 1 5.6698 -3.1278 1.2514 26 1 4.8010 -1.8538 2.1407 27 1 4.8038 -1.8546 -2.1377 28 1 5.6719 -3.1278 -1.2472 29 1 3.8919 -3.0978 -1.2481 30 1 8.2664 -3.0815 0.0025 31 1 0.7515 -2.5545 -0.0001 32 1 2.2187 -3.0292 -0.8890 33 1 2.2177 -3.0285 0.8910 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260695305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = 30.042631 kcal Electronic energy + Delta-G solvation = -16141.310179 eV Core-core repulsion = 13590.240764 eV Total energy + Delta-G solvation = -2551.069414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.48973 -38.63621 -37.11294 -34.15882 -33.12801 -32.39586 -27.85353 -27.63679 -26.98322 -26.67201 -22.96087 -21.92245 -20.12639 -18.25201 -17.90517 -17.18448 -16.69710 -16.21699 -15.81230 -15.09638 -14.94846 -14.53924 -14.19721 -14.13217 -13.96064 -13.53151 -13.44738 -12.95034 -12.91628 -12.52373 -12.39858 -12.09508 -12.01577 -11.77185 -11.67812 -10.75235 -10.67335 -10.37924 -9.90333 -8.62314 -8.03531 -6.15836 0.71554 0.84380 1.47803 1.49263 1.56269 2.36719 2.47879 2.82120 3.23132 3.81722 4.01651 4.29047 4.36127 4.41945 4.50722 4.62731 4.67061 4.87376 4.88990 4.94886 5.04318 5.14958 5.21512 5.41148 5.49918 5.58902 5.72694 6.03385 6.07031 6.31619 6.49346 6.56977 6.85544 7.32317 7.51373 8.96831 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.009507 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.341255 B = 2944.479567 C = 3529.450803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.426 5.426 3 C 0.512 3.488 4 O -0.621 6.621 5 C -0.399 4.399 6 C 0.242 3.758 7 C 0.114 3.886 8 C -0.125 4.125 9 C -0.125 4.125 10 C -0.525 4.525 11 H 0.053 0.947 12 C 0.035 3.965 13 N -0.898 5.898 14 Si 0.942 3.058 15 H -0.280 1.280 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.391 5.391 19 C 0.086 3.914 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.136 0.864 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 -5.972 0.012 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.246 5.246 3 C 0.313 3.687 4 O -0.508 6.508 5 C -0.429 4.429 6 C 0.123 3.877 7 C 0.111 3.889 8 C -0.183 4.183 9 C -0.183 4.183 10 C -0.564 4.564 11 H 0.071 0.929 12 C -0.165 4.165 13 N -0.536 5.536 14 Si 0.769 3.231 15 H -0.205 1.205 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.185 5.185 19 C -0.052 4.052 20 H 0.112 0.888 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.154 0.846 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.428 -5.749 0.008 12.793 hybrid contribution 1.145 0.923 0.003 1.471 sum -10.283 -4.826 0.011 11.359 Atomic orbital electron populations 1.22085 0.72592 1.05393 1.04400 1.48435 1.05057 0.98974 1.72095 1.17142 0.87892 0.83693 0.79960 1.90704 1.81586 1.17796 1.60722 1.21645 0.96761 0.95645 1.28800 1.21826 0.84370 0.94731 0.86745 1.17202 0.85611 0.91198 0.94842 1.21797 1.01819 0.98981 0.95705 1.21798 1.01824 0.98989 0.95702 1.21284 0.90604 0.93069 1.51401 0.92880 1.25317 1.00637 0.95965 0.94606 1.69838 1.24565 1.08656 1.50556 0.85863 0.79903 0.79007 0.78344 1.20540 1.20509 1.20531 1.46708 1.00152 1.00222 1.71381 1.22571 1.03327 0.74347 1.04958 0.88776 0.88836 0.88836 0.84608 0.92983 0.90533 0.96192 0.96204 0.90516 0.92980 0.92722 0.86551 0.89000 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.09 10.55 127.77 1.35 3.44 16 2 N -0.43 -14.80 4.02 -493.69 -1.98 -16.79 16 3 C 0.51 23.42 7.95 85.02 0.68 24.10 16 4 O -0.62 -31.91 17.65 -4.62 -0.08 -31.99 16 5 C -0.40 -19.03 9.85 22.28 0.22 -18.81 16 6 C 0.24 10.23 5.48 41.03 0.22 10.45 16 7 C 0.11 5.04 0.51 -53.67 -0.03 5.01 16 8 C -0.13 -5.15 8.14 71.98 0.59 -4.57 16 9 C -0.13 -5.16 8.14 71.98 0.59 -4.58 16 10 C -0.53 -27.11 7.77 25.60 0.20 -26.91 16 11 H 0.05 2.88 5.61 -2.91 -0.02 2.86 16 12 C 0.03 1.78 5.15 84.65 0.44 2.21 16 13 N -0.90 -45.39 9.35 21.45 0.20 -45.19 16 14 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 N -0.39 -13.00 4.06 -355.13 -1.44 -14.44 16 19 C 0.09 1.83 9.85 127.77 1.26 3.09 16 20 H 0.09 2.26 7.75 -2.39 -0.02 2.24 16 21 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.14 6.95 6.34 -2.91 -0.02 6.94 16 24 H 0.05 1.70 5.29 -2.38 -0.01 1.68 16 25 H 0.08 3.48 6.07 -2.39 -0.01 3.47 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 3.49 6.07 -2.39 -0.01 3.48 16 29 H 0.05 1.70 5.29 -2.39 -0.01 1.69 16 30 H 0.26 12.86 8.31 -92.71 -0.77 12.09 16 31 H 0.12 1.55 7.40 -2.38 -0.02 1.53 16 32 H 0.09 1.84 5.98 -2.39 -0.01 1.83 16 33 H 0.09 1.84 5.98 -2.38 -0.01 1.83 16 Total: -1.00 -67.12 261.96 5.35 -61.77 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.12 Total: 9.02 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.50 Total: -6.56 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -3.22 Total: -76.41 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.08 Total: -31.99 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.12 5.35 -61.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.816 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds