Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.36887 * 126.39462 * 60.02561 * 4 2 1 6 6 C 1.34668 * 106.81616 * 180.02562 * 5 4 2 7 7 N 1.34130 * 108.01901 * 0.02562 * 6 5 4 8 8 C 1.30502 * 109.25766 * 359.72205 * 7 6 5 9 9 C 1.50697 * 125.65039 * 180.29690 * 8 7 6 10 10 H 1.08992 * 109.47506 * 165.17613 * 9 8 7 11 11 O 1.42908 * 109.47271 * 45.17321 * 9 8 7 12 12 C 1.53005 * 109.47026 * 285.17615 * 9 8 7 13 13 C 1.50697 * 109.47323 * 185.00087 * 12 9 8 14 14 H 1.08007 * 119.99566 * 359.97438 * 13 12 9 15 15 C 1.37870 * 120.00111 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00370 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00024 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46813 * 60.00533 * 17 15 13 19 19 H 1.48496 * 109.47050 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47265 * 300.00657 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.07995 * 126.59001 * 359.96638 * 5 4 2 29 29 H 1.08002 * 125.98873 * 179.97438 * 6 5 4 30 30 H 0.96702 * 113.99686 * 300.00503 * 11 9 8 31 31 H 1.09000 * 109.47031 * 304.99982 * 12 9 8 32 32 H 1.08998 * 109.47240 * 64.99872 * 12 9 8 33 33 H 0.96999 * 120.00715 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7702 -0.3388 -2.4955 6 6 2.4053 -1.2382 -3.2708 7 7 3.0239 -2.1157 -2.4668 8 6 2.8012 -1.7907 -1.2227 9 6 3.3277 -2.5234 -0.0157 10 1 3.2116 -1.8972 0.8688 11 8 4.7114 -2.8249 -0.2076 12 6 2.5440 -3.8238 0.1736 13 6 2.9860 -4.4958 1.4479 14 1 3.7499 -4.0411 2.0613 15 6 2.4153 -5.6910 1.8308 16 7 1.4855 -6.2449 1.0837 17 14 2.9637 -6.5244 3.4101 18 1 2.7095 -5.6207 4.5607 19 1 2.2020 -7.7858 3.5944 20 1 4.4150 -6.8288 3.3310 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.1780 0.4986 -2.8337 29 1 2.4141 -1.2513 -4.3507 30 1 4.8896 -3.3803 -0.9789 31 1 1.4786 -3.6008 0.2311 32 1 2.7312 -4.4871 -0.6708 33 1 1.0842 -7.0860 1.3528 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260796540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -27.321060 kcal Electronic energy + Delta-G solvation = -15648.925507 eV Core-core repulsion = 13095.368616 eV Total energy + Delta-G solvation = -2553.556891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.09616 -38.22651 -36.94166 -35.01337 -32.21359 -31.63775 -29.99868 -28.22755 -26.70831 -23.87659 -23.62993 -21.62367 -20.59674 -18.88790 -18.03000 -17.12392 -16.43615 -16.27124 -16.11998 -15.43265 -15.03039 -14.68570 -14.50970 -14.32396 -13.93862 -13.21856 -13.16849 -13.12481 -12.82231 -12.63761 -12.51913 -12.40712 -12.15426 -11.93906 -11.31584 -11.03812 -10.81452 -10.60812 -10.53104 -9.24572 -8.21035 -6.32824 1.12853 1.40656 1.44435 1.52405 1.86356 2.21274 2.41623 3.11364 3.49472 3.53328 3.68649 3.83620 3.94514 4.11754 4.34140 4.51236 4.62587 4.64473 4.67376 4.77548 4.79580 4.90400 5.09025 5.20763 5.29021 5.41537 5.54643 5.73809 5.91812 6.13666 6.27930 6.72064 6.82332 7.22125 7.35968 8.90496 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031592 B = 0.007682 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.083215 B = 3644.142561 C = 3920.382532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 C -0.149 4.149 4 N -0.441 5.441 5 C -0.044 4.044 6 C -0.061 4.061 7 N -0.525 5.525 8 C 0.162 3.838 9 C 0.207 3.793 10 H 0.103 0.897 11 O -0.555 6.555 12 C 0.022 3.978 13 C -0.532 4.532 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.037 0.963 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.212 0.788 29 H 0.189 0.811 30 H 0.382 0.618 31 H -0.004 1.004 32 H -0.006 1.006 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 16.087 -2.582 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.007 3.993 3 C -0.207 4.207 4 N -0.124 5.124 5 C -0.177 4.177 6 C -0.209 4.209 7 N -0.245 5.245 8 C -0.101 4.101 9 C 0.146 3.854 10 H 0.121 0.879 11 O -0.359 6.359 12 C -0.017 4.017 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.194 1.194 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.228 0.772 29 H 0.206 0.794 30 H 0.231 0.769 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.917 15.722 -2.170 15.986 hybrid contribution -0.495 -0.656 0.129 0.832 sum -2.412 15.066 -2.041 15.393 Atomic orbital electron populations 1.22124 0.91762 1.02261 1.05001 1.21849 0.96832 0.95198 0.85431 1.22104 1.01275 0.92287 1.04987 1.45798 1.37131 1.21539 1.07980 1.23121 1.07469 1.04799 0.82343 1.22779 1.02468 0.94968 1.00673 1.70043 1.25591 1.28399 1.00506 1.24307 0.99008 0.90686 0.96117 1.20129 0.81370 0.94280 0.89592 0.87904 1.86381 1.23591 1.73398 1.52536 1.19445 0.94163 0.91760 0.96290 1.21421 1.21539 1.06800 1.07247 0.91828 1.25965 0.94891 0.97861 1.00901 1.70108 1.27887 1.19212 1.40104 0.85463 0.78493 0.77667 0.79205 1.18734 1.20836 1.19440 0.94397 0.90192 0.87943 0.89222 0.88011 0.93085 0.90348 0.77162 0.79444 0.76929 0.98524 0.98736 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.25 71.98 0.67 -2.49 16 2 C 0.11 2.66 3.53 44.99 0.16 2.82 16 3 C -0.15 -2.54 9.25 71.98 0.67 -1.87 16 4 N -0.44 -13.99 2.61 -491.91 -1.28 -15.27 16 5 C -0.04 -1.20 10.60 83.09 0.88 -0.31 16 6 C -0.06 -2.00 11.87 83.52 0.99 -1.01 16 7 N -0.53 -21.97 11.14 -188.13 -2.10 -24.06 16 8 C 0.16 6.61 6.78 138.13 0.94 7.54 16 9 C 0.21 9.34 3.25 29.85 0.10 9.44 16 10 H 0.10 4.35 6.52 -2.39 -0.02 4.34 16 11 O -0.55 -25.11 13.08 -148.98 -1.95 -27.06 16 12 C 0.02 1.18 4.64 29.85 0.14 1.32 16 13 C -0.53 -30.72 8.88 25.60 0.23 -30.50 16 14 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -57.61 13.29 21.44 0.28 -57.32 16 17 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.08 1.33 7.95 -2.39 -0.02 1.31 16 23 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.09 2.47 6.39 -2.39 -0.02 2.46 16 25 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.10 7.95 -2.39 -0.02 1.08 16 28 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.19 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.38 16.38 8.94 -74.06 -0.66 15.72 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -72.80 283.24 2.64 -70.16 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.43 Total: 21.26 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.22 Total: -14.50 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.09 Total: -96.65 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.95 Total: -27.06 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.80 2.64 -70.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260796540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.842 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds