Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 N 1.36683 * 110.76611 * 2 1 4 4 C 1.46496 * 123.49304 * 284.76383 * 3 2 1 5 5 C 1.50697 * 109.47403 * 95.23405 * 4 3 2 6 6 H 1.07999 * 119.99878 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00065 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46962 * 120.00061 * 9 7 5 12 12 H 1.48501 * 109.46616 * 239.99744 * 9 7 5 13 13 C 1.34737 * 113.01234 * 104.95386 * 3 2 1 14 14 O 1.21283 * 126.03002 * 181.09799 * 13 3 2 15 15 C 1.52098 * 107.94658 * 0.83468 * 13 3 2 16 16 C 1.46794 * 111.00142 * 119.46981 * 2 1 3 17 17 C 1.52456 * 116.65505 * 31.74995 * 16 2 1 18 18 C 1.54019 * 86.67146 * 143.92890 * 17 16 2 19 19 C 1.52464 * 116.64195 * 134.34833 * 16 2 1 20 20 H 1.09003 * 109.46597 * 300.53389 * 1 2 3 21 21 H 1.09000 * 109.47184 * 60.53096 * 1 2 3 22 22 H 1.08994 * 109.47358 * 180.53724 * 1 2 3 23 23 H 1.08999 * 109.47247 * 215.23858 * 4 3 2 24 24 H 1.09002 * 109.46662 * 335.23473 * 4 3 2 25 25 H 0.96999 * 120.00456 * 180.02562 * 8 7 5 26 26 H 1.08991 * 110.95336 * 132.25529 * 15 13 3 27 27 H 1.09001 * 110.94751 * 255.93684 * 15 13 3 28 28 H 1.09008 * 113.68373 * 258.37060 * 17 16 2 29 29 H 1.09007 * 113.68474 * 29.48151 * 17 16 2 30 30 H 1.09000 * 113.57383 * 220.94463 * 18 17 16 31 31 H 1.08999 * 113.64696 * 90.17565 * 18 17 16 32 32 H 1.08998 * 113.67895 * 330.50477 * 19 16 2 33 33 H 1.08996 * 113.68033 * 101.52210 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 7 1.9536 1.2780 0.0000 4 6 1.9491 2.1443 -1.1814 5 6 0.7237 3.0211 -1.1568 6 1 0.0189 2.9413 -0.3424 7 6 0.5023 3.9251 -2.1741 8 7 1.3608 4.0226 -3.1655 9 14 -1.0164 5.0124 -2.1431 10 1 -1.8166 4.7105 -0.9292 11 1 -0.6036 6.4387 -2.1226 12 1 -1.8363 4.7517 -3.3535 13 6 2.4396 1.6571 1.1981 14 8 2.9075 2.7433 1.4670 15 6 2.2920 0.4848 2.1559 16 6 1.9951 -0.6742 1.1931 17 6 1.1586 -1.8168 1.7578 18 6 2.4931 -2.5072 2.0965 19 6 3.1294 -1.6687 0.9721 20 1 -0.3632 0.5221 0.8852 21 1 -0.3633 0.5056 -0.8947 22 1 -0.3634 -1.0275 0.0096 23 1 2.8427 2.7685 -1.1776 24 1 1.9387 1.5304 -2.0820 25 1 1.2052 4.6588 -3.8810 26 1 3.2182 0.3094 2.7030 27 1 1.4604 0.6447 2.8423 28 1 0.5741 -1.5396 2.6352 29 1 0.5718 -2.3435 1.0051 30 1 2.4933 -3.5783 1.8948 31 1 2.8716 -2.2638 3.0893 32 1 3.1030 -2.1531 -0.0039 33 1 4.1136 -1.2729 1.2226 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260824810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = 29.844962 kcal Electronic energy + Delta-G solvation = -16103.772854 eV Core-core repulsion = 13552.694868 eV Total energy + Delta-G solvation = -2551.077986 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09477 -37.79894 -35.92363 -33.10707 -30.82462 -30.20959 -27.03188 -25.85277 -24.73934 -23.18912 -22.32719 -19.46119 -18.55565 -16.63034 -16.11048 -15.88945 -15.30821 -15.06730 -14.50132 -13.90273 -13.26571 -13.07377 -12.90807 -12.65279 -12.45500 -12.20766 -11.51446 -11.45399 -11.23423 -11.04406 -10.93919 -10.68688 -10.58666 -10.40137 -10.12874 -9.86794 -9.21081 -8.70259 -8.47586 -7.32086 -6.08868 -4.14668 3.23285 3.27379 3.35236 3.39346 3.52663 4.38055 4.40491 4.47716 4.55571 4.78453 4.91349 5.06859 5.25426 5.34292 5.60131 5.68881 5.77681 5.79073 5.85395 5.90131 6.01088 6.09677 6.21042 6.39032 6.49291 6.90303 7.21257 7.33300 7.64394 7.89190 8.14212 8.62903 8.82486 9.08118 9.50938 10.98643 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.008085 C = 0.007705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.687624 B = 3462.183657 C = 3633.228106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.279 5.279 3 N -0.448 5.448 4 C 0.269 3.731 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.494 3.506 14 O -0.530 6.530 15 C -0.165 4.165 16 C 0.055 3.945 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.111 4.111 20 H 0.028 0.972 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.264 0.736 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -13.376 8.277 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.094 5.094 3 N -0.269 5.269 4 C 0.151 3.849 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.278 3.722 14 O -0.405 6.405 15 C -0.207 4.207 16 C -0.035 4.035 17 C -0.165 4.165 18 C -0.176 4.176 19 C -0.149 4.149 20 H 0.047 0.953 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.119 -12.862 7.686 14.984 hybrid contribution -1.283 1.051 0.662 1.785 sum -1.402 -11.811 8.348 14.532 Atomic orbital electron populations 1.23069 0.87859 1.01378 1.02861 1.64738 1.07979 1.00507 1.36193 1.48737 1.56808 1.09275 1.12075 1.19310 0.98000 0.87277 0.80322 1.21486 1.07395 1.20444 1.07719 0.92438 1.24914 0.96962 0.96867 0.95167 1.69933 1.35715 1.36407 1.11017 0.86422 0.82581 0.80460 0.77852 1.19848 1.20776 1.20838 1.21118 0.79489 0.88092 0.83453 1.90681 1.47182 1.23767 1.78905 1.22643 1.04598 0.95085 0.98346 1.22811 0.98399 0.92978 0.89283 1.23002 0.96813 0.95900 1.00799 1.22815 0.96442 0.99395 0.98989 1.22769 0.96920 0.95601 0.99598 0.95345 0.89102 0.91046 0.93703 0.93645 0.92604 0.87918 0.88336 0.91034 0.88782 0.90933 0.90148 0.88757 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 8.93 60.07 0.54 0.48 16 2 N -0.28 -5.16 5.57 -107.54 -0.60 -5.76 16 3 N -0.45 -10.19 2.62 -60.97 -0.16 -10.35 16 4 C 0.27 7.20 5.56 -5.20 -0.03 7.17 16 5 C -0.53 -15.10 8.55 -34.44 -0.29 -15.40 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.49 11.11 8.17 -10.31 -0.08 11.03 16 14 O -0.53 -14.08 17.70 5.55 0.10 -13.98 16 15 C -0.17 -2.64 6.35 -26.89 -0.17 -2.81 16 16 C 0.06 0.80 1.08 -131.95 -0.14 0.66 16 17 C -0.13 -1.37 6.35 -26.48 -0.17 -1.53 16 18 C -0.14 -1.30 7.97 -25.70 -0.20 -1.50 16 19 C -0.11 -1.35 7.60 -26.47 -0.20 -1.55 16 20 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.09 1.78 7.46 -51.93 -0.39 1.39 16 22 H 0.07 0.95 6.42 -51.93 -0.33 0.62 16 23 H 0.05 1.33 8.04 -51.93 -0.42 0.91 16 24 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.10 1.43 7.95 -51.93 -0.41 1.02 16 27 H 0.10 1.44 8.08 -51.93 -0.42 1.02 16 28 H 0.07 0.71 8.07 -51.92 -0.42 0.29 16 29 H 0.09 0.96 6.86 -51.92 -0.36 0.60 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 LS Contribution 273.82 15.07 4.13 4.13 Total: -1.00 -32.39 273.82 -6.50 -38.89 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.82 Total: -2.34 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.86 Total: -1.75 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.02 Total: -41.77 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.10 Total: -13.98 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.39 -6.50 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260824810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.730 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds