Wall clock time and date at job start Mon Mar 30 2020 03:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 N 1.36683 * 110.76611 * 2 1 4 4 C 1.46496 * 123.49304 * 284.76383 * 3 2 1 5 5 C 1.50697 * 109.47403 * 95.23405 * 4 3 2 6 6 H 1.07999 * 119.99878 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00065 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46962 * 120.00061 * 9 7 5 12 12 H 1.48501 * 109.46616 * 239.99744 * 9 7 5 13 13 C 1.34737 * 113.01234 * 104.95386 * 3 2 1 14 14 O 1.21283 * 126.03002 * 181.09799 * 13 3 2 15 15 C 1.52098 * 107.94658 * 0.83468 * 13 3 2 16 16 C 1.46794 * 111.00142 * 119.46981 * 2 1 3 17 17 C 1.52456 * 116.65505 * 31.74995 * 16 2 1 18 18 C 1.54019 * 86.67146 * 143.92890 * 17 16 2 19 19 C 1.52464 * 116.64195 * 134.34833 * 16 2 1 20 20 H 1.09003 * 109.46597 * 300.53389 * 1 2 3 21 21 H 1.09000 * 109.47184 * 60.53096 * 1 2 3 22 22 H 1.08994 * 109.47358 * 180.53724 * 1 2 3 23 23 H 1.08999 * 109.47247 * 215.23858 * 4 3 2 24 24 H 1.09002 * 109.46662 * 335.23473 * 4 3 2 25 25 H 0.96999 * 120.00456 * 180.02562 * 8 7 5 26 26 H 1.08991 * 110.95336 * 132.25529 * 15 13 3 27 27 H 1.09001 * 110.94751 * 255.93684 * 15 13 3 28 28 H 1.09008 * 113.68373 * 258.37060 * 17 16 2 29 29 H 1.09007 * 113.68474 * 29.48151 * 17 16 2 30 30 H 1.09000 * 113.57383 * 220.94463 * 18 17 16 31 31 H 1.08999 * 113.64696 * 90.17565 * 18 17 16 32 32 H 1.08998 * 113.67895 * 330.50477 * 19 16 2 33 33 H 1.08996 * 113.68033 * 101.52210 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 7 1.9536 1.2780 0.0000 4 6 1.9491 2.1443 -1.1814 5 6 0.7237 3.0211 -1.1568 6 1 0.0189 2.9413 -0.3424 7 6 0.5023 3.9251 -2.1741 8 7 1.3608 4.0226 -3.1655 9 14 -1.0164 5.0124 -2.1431 10 1 -1.8166 4.7105 -0.9292 11 1 -0.6036 6.4387 -2.1226 12 1 -1.8363 4.7517 -3.3535 13 6 2.4396 1.6571 1.1981 14 8 2.9075 2.7433 1.4670 15 6 2.2920 0.4848 2.1559 16 6 1.9951 -0.6742 1.1931 17 6 1.1586 -1.8168 1.7578 18 6 2.4931 -2.5072 2.0965 19 6 3.1294 -1.6687 0.9721 20 1 -0.3632 0.5221 0.8852 21 1 -0.3633 0.5056 -0.8947 22 1 -0.3634 -1.0275 0.0096 23 1 2.8427 2.7685 -1.1776 24 1 1.9387 1.5304 -2.0820 25 1 1.2052 4.6588 -3.8810 26 1 3.2182 0.3094 2.7030 27 1 1.4604 0.6447 2.8423 28 1 0.5741 -1.5396 2.6352 29 1 0.5718 -2.3435 1.0051 30 1 2.4933 -3.5783 1.8948 31 1 2.8716 -2.2638 3.0893 32 1 3.1030 -2.1531 -0.0039 33 1 4.1136 -1.2729 1.2226 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260824810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:53 Heat of formation + Delta-G solvation = 7.288952 kcal Electronic energy + Delta-G solvation = -16104.750956 eV Core-core repulsion = 13552.694868 eV Total energy + Delta-G solvation = -2552.056088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.48598 -39.27143 -37.52483 -35.21793 -32.54409 -31.72912 -28.84511 -26.99381 -25.93400 -25.05786 -23.67988 -21.04169 -19.75754 -18.80537 -17.70919 -17.34015 -16.88492 -16.39158 -16.14310 -15.50288 -14.88646 -14.58047 -14.51789 -13.95749 -13.90002 -13.69596 -13.38911 -12.99789 -12.75591 -12.63959 -12.37588 -12.26734 -11.98529 -11.76135 -11.46810 -11.39616 -10.91061 -10.69820 -10.40648 -9.03477 -8.27792 -6.44452 1.33384 1.35824 1.46433 1.53323 1.86600 2.34398 2.99726 3.12620 3.31713 3.50243 3.74354 3.83642 3.95053 4.43529 4.47406 4.50232 4.58171 4.73116 4.88345 4.92976 4.98626 5.03787 5.06348 5.12450 5.18156 5.28258 5.38687 5.56480 5.62246 5.91139 6.06444 6.61232 6.89709 7.19442 7.37119 8.78969 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.008085 C = 0.007705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.687624 B = 3462.183657 C = 3633.228106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.292 5.292 3 N -0.457 5.457 4 C 0.285 3.715 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.266 1.266 13 C 0.473 3.527 14 O -0.586 6.586 15 C -0.146 4.146 16 C 0.042 3.958 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.117 4.117 20 H 0.025 0.975 21 H 0.056 0.944 22 H 0.116 0.884 23 H 0.003 0.997 24 H 0.030 0.970 25 H 0.270 0.730 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -15.480 9.818 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.108 5.108 3 N -0.275 5.275 4 C 0.165 3.835 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.191 1.191 13 C 0.260 3.740 14 O -0.466 6.466 15 C -0.187 4.187 16 C -0.047 4.047 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.156 4.156 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.134 0.866 23 H 0.021 0.979 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.593 -15.016 9.236 17.701 hybrid contribution -0.766 1.650 0.149 1.825 sum -2.358 -13.366 9.385 16.502 Atomic orbital electron populations 1.23029 0.86950 1.03649 1.00994 1.64739 1.08878 0.97910 1.39276 1.48613 1.56989 1.10761 1.11126 1.18721 0.95843 0.87256 0.81729 1.21638 1.07660 1.21285 1.07792 0.93101 1.25846 1.00249 0.98123 0.94587 1.70044 1.37557 1.37154 1.11662 0.85323 0.78610 0.78119 0.78491 1.19344 1.20450 1.19098 1.22314 0.78190 0.89081 0.84412 1.90626 1.49393 1.26580 1.79994 1.22641 1.06642 0.92053 0.97334 1.23296 1.00974 0.93152 0.87296 1.23059 0.97509 0.93543 1.01327 1.22772 0.94338 1.00125 0.98333 1.22882 0.96156 0.95530 1.00996 0.95662 0.92478 0.86602 0.97941 0.95171 0.92096 0.85466 0.86302 0.89367 0.87746 0.88720 0.88651 0.89044 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.93 127.69 1.14 1.20 16 2 N -0.29 -10.65 5.57 -494.16 -2.75 -13.40 16 3 N -0.46 -21.44 2.62 -465.22 -1.22 -22.66 16 4 C 0.28 16.15 5.56 85.63 0.48 16.63 16 5 C -0.55 -32.15 8.55 25.60 0.22 -31.93 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.92 -56.29 13.29 21.45 0.28 -56.01 16 9 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.47 21.74 8.17 88.11 0.72 22.46 16 14 O -0.59 -32.57 17.70 -3.04 -0.05 -32.62 16 15 C -0.15 -4.37 6.35 30.49 0.19 -4.17 16 16 C 0.04 1.10 1.08 3.36 0.00 1.11 16 17 C -0.12 -1.95 6.35 30.76 0.20 -1.76 16 18 C -0.12 -1.63 7.97 31.26 0.25 -1.38 16 19 C -0.12 -2.54 7.60 30.76 0.23 -2.30 16 20 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.06 2.25 7.46 -2.39 -0.02 2.24 16 22 H 0.12 2.72 6.42 -2.39 -0.02 2.70 16 23 H 0.00 0.17 8.04 -2.39 -0.02 0.15 16 24 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.13 3.19 7.95 -2.39 -0.02 3.18 16 27 H 0.12 3.11 8.08 -2.39 -0.02 3.09 16 28 H 0.09 1.26 8.07 -2.38 -0.02 1.24 16 29 H 0.10 1.59 6.86 -2.38 -0.02 1.58 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.47 8.06 -2.39 -0.02 1.45 16 Total: -1.00 -74.59 273.82 3.26 -71.33 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.08 Total: 5.05 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 3.89 Total: 0.98 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -3.69 Total: -92.07 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.05 Total: -32.62 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.59 3.26 -71.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260824810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.615 kcal (2) G-P(sol) polarization free energy of solvation -74.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds