Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.39815 * 125.86114 * 84.99709 * 4 2 1 6 6 C 1.35945 * 107.83811 * 179.97438 * 5 4 2 7 7 O 1.35758 * 126.19659 * 180.02562 * 6 5 4 8 8 N 1.35132 * 107.61002 * 359.97438 * 6 5 4 9 9 C 1.46505 * 126.03521 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.47148 * 0.02562 * 9 8 6 11 11 C 1.53007 * 109.47006 * 120.00156 * 9 8 6 12 12 C 1.50697 * 109.47245 * 239.99826 * 9 8 6 13 13 H 1.08007 * 119.99971 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00181 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99833 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 120.00052 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47257 * 89.99485 * 16 14 12 18 18 H 1.48497 * 109.46785 * 209.99833 * 16 14 12 19 19 H 1.48503 * 109.46667 * 329.99702 * 16 14 12 20 20 N 1.30832 * 125.85675 * 264.68693 * 4 2 1 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08001 * 126.08369 * 359.94556 * 5 4 2 29 29 H 0.96697 * 113.99874 * 89.97347 * 7 6 5 30 30 H 1.08996 * 109.46951 * 299.99949 * 11 9 8 31 31 H 1.08993 * 109.47017 * 60.00104 * 11 9 8 32 32 H 1.09003 * 109.46769 * 180.02562 * 11 9 8 33 33 H 0.97006 * 119.99982 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.2122 -0.1352 -2.4922 6 6 2.6783 -1.1012 -3.3276 7 8 2.9808 -0.9468 -4.6420 8 7 2.7870 -2.2426 -2.6124 9 6 3.2517 -3.5362 -3.1192 10 1 3.5023 -3.4437 -4.1759 11 6 4.4922 -3.9743 -2.3378 12 6 2.1622 -4.5633 -2.9488 13 1 1.2178 -4.2806 -2.5075 14 6 2.3709 -5.8638 -3.3562 15 7 3.5206 -6.2079 -3.8939 16 14 1.0200 -7.1368 -3.1456 17 1 0.1646 -7.1562 -4.3592 18 1 1.6290 -8.4766 -2.9477 19 1 0.1927 -6.7893 -1.9623 20 7 2.3804 -1.9696 -1.3001 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 2.0154 0.8933 -2.7563 29 1 3.8979 -0.6883 -4.8067 30 1 5.2802 -3.2314 -2.4611 31 1 4.2420 -4.0667 -1.2810 32 1 4.8382 -4.9366 -2.7152 33 1 3.6674 -7.1229 -4.1809 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -4.558372 kcal Electronic energy + Delta-G solvation = -15609.746271 eV Core-core repulsion = 13057.176445 eV Total energy + Delta-G solvation = -2552.569826 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20357 -38.28375 -37.00318 -35.65340 -33.23507 -30.21908 -29.61286 -27.85477 -27.44594 -24.39758 -22.92247 -21.80707 -20.28737 -18.97114 -18.52966 -17.29917 -16.50196 -15.82952 -15.53994 -15.32877 -14.94952 -14.77600 -14.30713 -13.95226 -13.63531 -13.26434 -12.98544 -12.90181 -12.75182 -12.48809 -12.37453 -12.16886 -12.07587 -11.96213 -11.87159 -11.39846 -11.03540 -10.67169 -9.89529 -9.32562 -8.30703 -6.45607 0.99852 1.34826 1.35808 1.46992 1.70964 1.89548 2.33543 2.97307 3.16860 3.71860 4.10409 4.33636 4.38939 4.58643 4.66912 4.71844 4.74140 4.82644 4.91310 4.92960 5.07716 5.16792 5.25846 5.27096 5.46148 5.49844 5.58691 5.64512 5.84025 5.98477 6.02886 6.55340 6.82407 7.04464 7.24364 8.74149 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.008203 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.578931 B = 3412.513048 C = 3848.474838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.013 4.013 3 C -0.131 4.131 4 C 0.063 3.937 5 C -0.289 4.289 6 C 0.235 3.765 7 O -0.475 6.475 8 N -0.357 5.357 9 C 0.279 3.721 10 H 0.044 0.956 11 C -0.129 4.129 12 C -0.544 4.544 13 H 0.042 0.958 14 C 0.026 3.974 15 N -0.909 5.909 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.277 1.277 20 N -0.312 5.312 21 H 0.089 0.911 22 H 0.032 0.968 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.172 0.828 29 H 0.412 0.588 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 12.770 4.268 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.034 4.034 3 C -0.189 4.189 4 C -0.102 4.102 5 C -0.319 4.319 6 C 0.063 3.937 7 O -0.281 6.281 8 N -0.147 5.147 9 C 0.180 3.820 10 H 0.062 0.938 11 C -0.187 4.187 12 C -0.582 4.582 13 H 0.060 0.940 14 C -0.175 4.175 15 N -0.547 5.547 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.202 1.202 20 N -0.138 5.138 21 H 0.107 0.893 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.189 0.811 29 H 0.271 0.729 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.412 11.253 4.549 12.219 hybrid contribution 0.022 -0.304 -0.777 0.834 sum -1.390 10.949 3.773 11.664 Atomic orbital electron populations 1.21761 0.93192 1.01162 1.03213 1.19637 0.96296 0.96184 0.91256 1.21746 1.00914 0.92852 1.03361 1.22687 0.99208 0.91152 0.97134 1.21132 1.17807 1.00626 0.92351 1.19296 1.02652 0.87553 0.84154 1.84804 1.35780 1.90375 1.17107 1.49881 1.48554 1.09802 1.06464 1.18957 0.93485 0.76529 0.93046 0.93832 1.21849 0.95864 1.01976 0.99051 1.21309 0.99715 0.94838 1.42355 0.93977 1.25594 0.98288 0.99637 0.93939 1.69916 1.24006 1.19932 1.40825 0.85446 0.78907 0.78157 0.78516 1.19702 1.19402 1.20242 1.77347 1.22056 1.17281 0.97114 0.89258 0.94916 0.92192 0.90572 0.89820 0.92968 0.91529 0.81074 0.72906 0.94970 0.94964 0.89756 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.18 71.98 0.66 -2.66 16 2 C -0.01 -0.37 3.38 -11.54 -0.04 -0.40 16 3 C -0.13 -2.59 8.78 71.98 0.63 -1.96 16 4 C 0.06 2.35 6.12 43.09 0.26 2.62 16 5 C -0.29 -10.28 10.00 22.12 0.22 -10.06 16 6 C 0.23 9.72 7.98 83.65 0.67 10.39 16 7 O -0.47 -17.01 13.30 -90.84 -1.21 -18.22 16 8 N -0.36 -17.29 3.27 -442.74 -1.45 -18.74 16 9 C 0.28 14.86 3.07 44.25 0.14 15.00 16 10 H 0.04 2.43 7.77 -2.39 -0.02 2.41 16 11 C -0.13 -6.46 9.23 71.98 0.66 -5.79 16 12 C -0.54 -31.69 8.77 25.60 0.22 -31.47 16 13 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 14 C 0.03 1.46 5.30 84.65 0.45 1.91 16 15 N -0.91 -50.84 11.32 21.45 0.24 -50.60 16 16 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 N -0.31 -14.66 12.41 -47.42 -0.59 -15.25 16 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.22 7.30 -2.39 -0.02 1.20 16 28 H 0.17 4.80 7.42 -2.91 -0.02 4.78 16 29 H 0.41 9.95 9.06 -74.06 -0.67 9.28 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 4.46 6.07 -2.39 -0.01 4.45 16 33 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -67.30 281.84 3.33 -63.97 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.43 Total: 14.73 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.88 Total: -22.43 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.79 Total: -84.59 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.21 Total: -18.22 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.30 3.33 -63.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.412 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds