Wall clock time and date at job start Mon Mar 30 2020 02:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47146 * 2 1 4 4 N 1.46500 * 109.47106 * 175.23776 * 3 2 1 5 5 N 1.40074 * 126.03613 * 275.19960 * 4 3 2 6 6 C 1.30834 * 108.33651 * 179.76296 * 5 4 3 7 7 C 1.39816 * 108.28562 * 0.40493 * 6 5 4 8 8 C 1.50701 * 126.08156 * 179.85830 * 7 6 5 9 9 C 1.50701 * 109.46676 * 264.68880 * 8 7 6 10 10 H 1.07999 * 120.00336 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99589 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00346 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46970 * 60.00210 * 13 11 9 15 15 H 1.48503 * 109.47136 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47300 * 300.00050 * 13 11 9 17 17 C 1.35134 * 126.03845 * 95.22199 * 4 3 2 18 18 O 1.35759 * 126.19007 * 359.96725 * 17 4 3 19 19 C 1.42893 * 117.00481 * 85.04833 * 18 17 4 20 20 H 1.09000 * 109.47354 * 299.99568 * 1 2 3 21 21 H 1.08998 * 109.47481 * 59.99887 * 1 2 3 22 22 H 1.09005 * 109.46792 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46797 * 240.00031 * 2 1 3 24 24 H 1.09002 * 109.47027 * 120.00281 * 2 1 3 25 25 H 1.08996 * 109.46957 * 55.24175 * 3 2 1 26 26 H 1.08998 * 109.47118 * 295.23498 * 3 2 1 27 27 H 1.08001 * 125.85266 * 180.24079 * 6 5 4 28 28 H 1.08997 * 109.47192 * 144.68760 * 8 7 6 29 29 H 1.09000 * 109.47441 * 24.68443 * 8 7 6 30 30 H 0.96997 * 120.00008 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47210 * 185.03417 * 19 18 17 32 32 H 1.08994 * 109.47553 * 305.03290 * 19 18 17 33 33 H 1.09003 * 109.47126 * 65.03597 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5005 1.4440 0.1147 5 7 4.2336 1.3735 1.3062 6 6 5.5072 1.3948 1.0076 7 6 5.6306 1.4888 -0.3819 8 6 6.9221 1.5453 -1.1564 9 6 7.2800 2.9831 -1.4319 10 1 6.6365 3.7765 -1.0816 11 6 8.4292 3.2855 -2.1313 12 7 9.2131 2.3195 -2.5574 13 14 8.8725 5.0677 -2.4734 14 1 9.0335 5.7933 -1.1877 15 1 10.1459 5.1235 -3.2354 16 1 7.7911 5.7030 -3.2683 17 6 4.3783 1.5142 -0.9103 18 8 4.0661 1.5951 -2.2290 19 6 3.8018 2.8973 -2.7545 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 1.6087 1.9802 0.8443 26 1 1.7480 1.9310 -0.9296 27 1 6.3232 1.3503 1.7137 28 1 6.8033 1.0132 -2.1002 29 1 7.7161 1.0786 -0.5736 30 1 10.0213 2.5323 -3.0497 31 1 3.4795 2.8119 -3.7922 32 1 3.0159 3.3732 -2.1680 33 1 4.7084 3.5004 -2.7041 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260849293.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:10 Heat of formation + Delta-G solvation = 27.314689 kcal Electronic energy + Delta-G solvation = -15503.602121 eV Core-core repulsion = 12952.414414 eV Total energy + Delta-G solvation = -2551.187707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71852 -37.28181 -35.30887 -33.20138 -31.23170 -29.95373 -27.66577 -26.04525 -25.50491 -22.71191 -21.92064 -20.21441 -19.58083 -17.18351 -16.26438 -15.43770 -15.21580 -15.00921 -14.49709 -14.16499 -13.94635 -13.10062 -12.87288 -12.55993 -12.24727 -11.96437 -11.90180 -11.55554 -11.36646 -11.12462 -10.90596 -10.80723 -10.59357 -10.33731 -9.61010 -9.40468 -9.33226 -8.62663 -8.33502 -7.37564 -5.95105 -3.98330 2.25937 2.87324 3.33205 3.38273 3.39517 3.52006 4.32207 4.50083 4.73732 4.85943 5.12230 5.20096 5.37856 5.40655 5.54472 5.61389 5.64697 5.76735 5.86519 6.00336 6.14024 6.17267 6.30445 6.43638 6.81446 6.95657 7.38267 7.67812 7.85786 8.00969 8.18753 8.35698 8.45815 9.05844 9.64042 11.14143 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042531 B = 0.007058 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.189418 B = 3966.040976 C = 4222.033269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.138 3.862 4 N -0.391 5.391 5 N -0.297 5.297 6 C 0.051 3.949 7 C -0.177 4.177 8 C 0.087 3.913 9 C -0.506 4.506 10 H 0.051 0.949 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.279 1.279 17 C 0.222 3.778 18 O -0.304 6.304 19 C 0.032 3.968 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.181 0.819 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -1.361 2.646 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.016 3.984 4 N -0.185 5.185 5 N -0.122 5.122 6 C -0.133 4.133 7 C -0.189 4.189 8 C 0.049 3.951 9 C -0.544 4.544 10 H 0.069 0.931 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.717 3.283 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.204 1.204 17 C 0.058 3.942 18 O -0.213 6.213 19 C -0.063 4.063 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.198 0.802 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.916 -1.586 3.221 15.342 hybrid contribution 0.805 1.315 -0.859 1.764 sum -14.111 -0.272 2.362 14.310 Atomic orbital electron populations 1.21693 0.94860 1.02092 1.01871 1.21913 0.96038 0.96416 1.03441 1.21532 0.76059 0.97953 1.02858 1.48898 1.05523 1.59915 1.04202 1.77235 1.04876 1.26509 1.03604 1.23608 0.93785 1.00050 0.95862 1.20751 0.95623 1.08802 0.93682 1.17642 0.86400 0.97003 0.94019 1.21062 1.06855 0.91824 1.34701 0.93110 1.24981 0.96386 0.96918 0.95936 1.69942 1.13818 1.31473 1.38095 0.86705 0.77681 0.85524 0.78354 1.20272 1.21256 1.20432 1.18786 0.88548 1.06208 0.80698 1.86045 1.88933 1.29173 1.17178 1.23082 1.00998 0.84060 0.98154 0.92505 0.92558 0.92249 0.91257 0.91023 0.89646 0.89896 0.80179 0.95397 0.95400 0.92917 0.89086 0.94830 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.14 -1.70 6.26 -26.74 -0.17 -1.87 16 3 C 0.14 1.91 6.41 -4.05 -0.03 1.88 16 4 N -0.39 -7.31 3.62 -61.49 -0.22 -7.53 16 5 N -0.30 -5.88 12.57 30.61 0.38 -5.49 16 6 C 0.05 1.05 11.95 -17.39 -0.21 0.85 16 7 C -0.18 -4.10 5.31 -104.86 -0.56 -4.65 16 8 C 0.09 2.32 5.43 -29.03 -0.16 2.16 16 9 C -0.51 -14.18 9.09 -34.44 -0.31 -14.49 16 10 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 13 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.22 4.71 6.93 -16.92 -0.12 4.60 16 18 O -0.30 -6.14 10.37 -18.99 -0.20 -6.34 16 19 C 0.03 0.54 11.13 101.05 1.12 1.67 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.08 1.04 7.60 -51.93 -0.39 0.65 16 27 H 0.18 3.22 8.06 -52.49 -0.42 2.79 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.03 0.48 7.71 -51.93 -0.40 0.08 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -31.56 289.42 -5.09 -36.65 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.99 Total: -3.03 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.15 Total: -9.24 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.90 Total: -38.83 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.20 Total: -6.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.56 -5.09 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849293.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.968 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds