Wall clock time and date at job start Mon Mar 30 2020 02:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47146 * 2 1 4 4 N 1.46500 * 109.47106 * 175.23776 * 3 2 1 5 5 N 1.40074 * 126.03613 * 275.19960 * 4 3 2 6 6 C 1.30834 * 108.33651 * 179.76296 * 5 4 3 7 7 C 1.39816 * 108.28562 * 0.40493 * 6 5 4 8 8 C 1.50701 * 126.08156 * 179.85830 * 7 6 5 9 9 C 1.50701 * 109.46676 * 264.68880 * 8 7 6 10 10 H 1.07999 * 120.00336 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99589 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00346 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46970 * 60.00210 * 13 11 9 15 15 H 1.48503 * 109.47136 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47300 * 300.00050 * 13 11 9 17 17 C 1.35134 * 126.03845 * 95.22199 * 4 3 2 18 18 O 1.35759 * 126.19007 * 359.96725 * 17 4 3 19 19 C 1.42893 * 117.00481 * 85.04833 * 18 17 4 20 20 H 1.09000 * 109.47354 * 299.99568 * 1 2 3 21 21 H 1.08998 * 109.47481 * 59.99887 * 1 2 3 22 22 H 1.09005 * 109.46792 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46797 * 240.00031 * 2 1 3 24 24 H 1.09002 * 109.47027 * 120.00281 * 2 1 3 25 25 H 1.08996 * 109.46957 * 55.24175 * 3 2 1 26 26 H 1.08998 * 109.47118 * 295.23498 * 3 2 1 27 27 H 1.08001 * 125.85266 * 180.24079 * 6 5 4 28 28 H 1.08997 * 109.47192 * 144.68760 * 8 7 6 29 29 H 1.09000 * 109.47441 * 24.68443 * 8 7 6 30 30 H 0.96997 * 120.00008 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47210 * 185.03417 * 19 18 17 32 32 H 1.08994 * 109.47553 * 305.03290 * 19 18 17 33 33 H 1.09003 * 109.47126 * 65.03597 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5005 1.4440 0.1147 5 7 4.2336 1.3735 1.3062 6 6 5.5072 1.3948 1.0076 7 6 5.6306 1.4888 -0.3819 8 6 6.9221 1.5453 -1.1564 9 6 7.2800 2.9831 -1.4319 10 1 6.6365 3.7765 -1.0816 11 6 8.4292 3.2855 -2.1313 12 7 9.2131 2.3195 -2.5574 13 14 8.8725 5.0677 -2.4734 14 1 9.0335 5.7933 -1.1877 15 1 10.1459 5.1235 -3.2354 16 1 7.7911 5.7030 -3.2683 17 6 4.3783 1.5142 -0.9103 18 8 4.0661 1.5951 -2.2290 19 6 3.8018 2.8973 -2.7545 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 1.6087 1.9802 0.8443 26 1 1.7480 1.9310 -0.9296 27 1 6.3232 1.3503 1.7137 28 1 6.8033 1.0132 -2.1002 29 1 7.7161 1.0786 -0.5736 30 1 10.0213 2.5323 -3.0497 31 1 3.4795 2.8119 -3.7922 32 1 3.0159 3.3732 -2.1680 33 1 4.7084 3.5004 -2.7041 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849293.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:10 Heat of formation + Delta-G solvation = 6.779588 kcal Electronic energy + Delta-G solvation = -15504.492589 eV Core-core repulsion = 12952.414414 eV Total energy + Delta-G solvation = -2552.078176 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29756 -38.82996 -36.50144 -35.21624 -32.77863 -31.62233 -29.25162 -27.51278 -26.98098 -24.66125 -23.02981 -21.63498 -21.25001 -18.69255 -18.39942 -16.97226 -16.66225 -16.57699 -16.01508 -15.49490 -15.27529 -14.61876 -14.36231 -14.21335 -13.77086 -13.44320 -13.17022 -13.00457 -12.81494 -12.63453 -12.48251 -12.28323 -12.11942 -11.77836 -11.51927 -11.46270 -10.97501 -10.51706 -10.12731 -9.11098 -8.10775 -6.24006 0.68651 1.40927 1.43262 1.44423 1.52396 1.85311 2.45470 2.84745 3.18198 3.56060 3.88948 4.04811 4.19672 4.24293 4.45073 4.48807 4.50974 4.63531 4.69532 4.79924 4.84702 5.09089 5.10797 5.14019 5.31243 5.40900 5.45833 5.68507 5.81830 5.83241 6.28633 6.62306 6.75266 6.86922 7.43299 8.97437 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042531 B = 0.007058 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.189418 B = 3966.040976 C = 4222.033269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.126 3.874 4 N -0.381 5.381 5 N -0.296 5.296 6 C 0.049 3.951 7 C -0.222 4.222 8 C 0.102 3.898 9 C -0.517 4.517 10 H 0.049 0.951 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.230 3.770 18 O -0.319 6.319 19 C 0.031 3.969 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.199 0.801 28 H -0.007 1.007 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.153 -0.064 2.780 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.006 3.994 4 N -0.174 5.174 5 N -0.121 5.121 6 C -0.135 4.135 7 C -0.234 4.234 8 C 0.064 3.936 9 C -0.555 4.555 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.571 5.571 13 Si 0.784 3.216 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.192 1.192 17 C 0.063 3.937 18 O -0.229 6.229 19 C -0.064 4.064 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.216 0.784 28 H 0.012 0.988 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.011 -0.289 3.371 17.344 hybrid contribution 1.343 0.863 -0.930 1.848 sum -15.667 0.574 2.441 15.867 Atomic orbital electron populations 1.21656 0.91941 1.03111 1.03058 1.21849 0.98421 0.94838 1.02050 1.22043 0.73118 0.99572 1.04693 1.49229 1.07085 1.58075 1.03040 1.77201 1.04436 1.26406 1.04096 1.23804 0.94698 0.99868 0.95085 1.20515 0.95114 1.12816 0.94910 1.17271 0.87901 0.95921 0.92505 1.21304 1.07044 0.92415 1.34739 0.93242 1.25860 0.96160 1.01588 0.95518 1.70079 1.14328 1.33914 1.38824 0.85595 0.77660 0.79841 0.78520 1.19457 1.20755 1.19185 1.18763 0.88695 1.04808 0.81464 1.86007 1.89003 1.31192 1.16730 1.23272 1.00397 0.82264 1.00462 0.91305 0.91371 0.91389 0.92764 0.92354 0.87608 0.88149 0.78413 0.98827 0.97605 0.92732 0.85708 0.92143 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.13 -2.97 6.26 30.59 0.19 -2.77 16 3 C 0.13 3.14 6.41 86.38 0.55 3.70 16 4 N -0.38 -13.70 3.62 -459.78 -1.66 -15.36 16 5 N -0.30 -11.41 12.57 -57.06 -0.72 -12.13 16 6 C 0.05 2.03 11.95 85.22 1.02 3.04 16 7 C -0.22 -10.48 5.31 -20.02 -0.11 -10.59 16 8 C 0.10 5.68 5.43 29.10 0.16 5.83 16 9 C -0.52 -29.64 9.09 25.60 0.23 -29.40 16 10 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 11 C 0.01 0.38 5.46 84.66 0.46 0.84 16 12 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 13 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 C 0.23 9.70 6.93 83.65 0.58 10.27 16 18 O -0.32 -12.76 10.37 -90.85 -0.94 -13.70 16 19 C 0.03 0.98 11.13 113.37 1.26 2.24 16 20 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.10 2.19 7.60 -2.39 -0.02 2.17 16 27 H 0.20 7.10 8.06 -2.91 -0.02 7.08 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.12 3.07 8.14 -2.39 -0.02 3.06 16 32 H 0.06 1.58 7.71 -2.39 -0.02 1.56 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.00 289.42 5.13 -63.87 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.07 Total: 5.72 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.07 Total: -18.18 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -2.10 Total: -83.78 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.94 Total: -13.70 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.00 5.13 -63.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849293.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.647 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds