Wall clock time and date at job start Mon Mar 30 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53002 * 109.46943 * 239.99927 * 2 1 3 5 5 C 1.52998 * 109.47315 * 120.00283 * 2 1 3 6 6 O 1.42901 * 109.47043 * 59.99765 * 5 2 1 7 7 C 1.36185 * 116.99765 * 180.02562 * 6 5 2 8 8 C 1.40501 * 126.05386 * 359.69349 * 7 6 5 9 9 N 1.30949 * 108.41047 * 179.81615 * 8 7 6 10 10 N 1.40084 * 108.35780 * 0.43821 * 9 8 7 11 11 C 1.37328 * 126.09565 * 179.71949 * 10 9 8 12 12 H 1.08003 * 119.99935 * 180.02562 * 11 10 9 13 13 C 1.38984 * 120.00421 * 0.02562 * 11 10 9 14 14 N 1.31299 * 119.99734 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00436 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47328 * 89.99452 * 15 13 11 17 17 H 1.48503 * 109.47012 * 209.99889 * 15 13 11 18 18 H 1.48501 * 109.46883 * 329.99784 * 15 13 11 19 19 C 1.35507 * 126.04986 * 179.97438 * 7 6 5 20 20 H 1.08996 * 109.46998 * 300.00109 * 1 2 3 21 21 H 1.09006 * 109.47255 * 60.00040 * 1 2 3 22 22 H 1.09003 * 109.47378 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46896 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.47524 * 300.00119 * 3 2 1 25 25 H 1.08996 * 109.47254 * 60.00048 * 3 2 1 26 26 H 1.08994 * 109.47651 * 299.99823 * 4 2 1 27 27 H 1.09005 * 109.46853 * 60.00424 * 4 2 1 28 28 H 1.09005 * 109.47456 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.46613 * 300.00032 * 5 2 1 30 30 H 1.08999 * 109.47410 * 179.97438 * 5 2 1 31 31 H 1.08004 * 125.79209 * 359.97438 * 8 7 6 32 32 H 0.96998 * 120.00045 * 180.02562 * 14 13 11 33 33 H 1.07998 * 126.23799 * 359.96498 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 8 1.5636 -2.0686 1.2491 7 6 1.9292 -2.8536 2.3002 8 6 2.7364 -2.4637 3.3821 9 7 2.8636 -3.4846 4.1922 10 7 2.1527 -4.5654 3.6549 11 6 2.0470 -5.8187 4.2064 12 1 1.4708 -6.5824 3.7052 13 6 2.6814 -6.1043 5.4095 14 7 3.3823 -5.1760 6.0186 15 14 2.5383 -7.8092 6.1594 16 1 3.6442 -8.6645 5.6589 17 1 2.6212 -7.7079 7.6386 18 1 1.2355 -8.4104 5.7766 19 6 1.5831 -4.1506 2.4851 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1393 28 1 3.1300 -0.7209 -1.2496 29 1 1.6766 -0.2074 2.1392 30 1 3.1300 -0.7217 1.2490 31 1 3.1752 -1.4869 3.5230 32 1 3.8254 -5.3754 6.8581 33 1 0.9685 -4.7474 1.8274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260849728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:26 Heat of formation + Delta-G solvation = 24.930994 kcal Electronic energy + Delta-G solvation = -15257.201989 eV Core-core repulsion = 12705.910917 eV Total energy + Delta-G solvation = -2551.291072 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59650 -37.99988 -35.49529 -33.29307 -30.21746 -28.10712 -27.18325 -27.06704 -25.64483 -24.73502 -20.66381 -19.56921 -18.72646 -17.61673 -15.78161 -15.28760 -15.17092 -14.79346 -14.04377 -13.76552 -13.43832 -12.99905 -12.89194 -12.81416 -12.17381 -11.92466 -11.67714 -11.50818 -11.22377 -11.02474 -10.85401 -10.81374 -10.63799 -10.49733 -10.25018 -10.14661 -9.23866 -8.72564 -8.08913 -6.67614 -6.52245 -4.19300 2.99369 3.08026 3.12803 3.63341 3.81493 4.18272 4.26493 4.83329 4.94459 4.95248 5.05541 5.22151 5.60065 5.65429 5.68698 5.89511 5.92666 5.94535 5.97523 6.15270 6.18460 6.23342 6.28262 6.52715 6.52798 6.68893 6.85541 7.05003 7.34717 7.62493 8.01491 8.57067 8.82935 9.41872 9.65913 10.44647 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.073684 B = 0.005454 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.910415 B = 5132.810965 C = 5316.358539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.137 4.137 5 C 0.084 3.916 6 O -0.310 6.310 7 C -0.068 4.068 8 C -0.109 4.109 9 N -0.246 5.246 10 N -0.143 5.143 11 C -0.320 4.320 12 H 0.117 0.883 13 C 0.045 3.955 14 N -0.777 5.777 15 Si 0.935 3.065 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.079 4.079 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.149 0.851 32 H 0.273 0.727 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 6.792 -8.327 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.194 4.194 5 C 0.007 3.993 6 O -0.223 6.223 7 C -0.124 4.124 8 C -0.282 4.282 9 N -0.081 5.081 10 N 0.085 4.915 11 C -0.453 4.453 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.404 5.404 15 Si 0.759 3.241 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.225 4.225 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.166 0.834 32 H 0.084 0.916 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.177 6.387 -7.233 9.892 hybrid contribution -0.205 -0.211 -0.229 0.373 sum -2.381 6.176 -7.462 9.975 Atomic orbital electron populations 1.21793 0.94133 1.02655 1.00838 1.20570 0.96470 0.94642 0.95059 1.21821 1.01076 0.94963 1.01838 1.21794 1.00656 1.01136 0.95834 1.22420 0.97621 0.82591 0.96646 1.85762 1.72666 1.21417 1.42495 1.18223 1.09321 0.92012 0.92834 1.23561 1.07749 1.00030 0.96858 1.78114 1.17493 0.92575 1.19919 1.44477 1.27597 1.08202 1.11267 1.19871 1.34038 0.85232 1.06130 0.86558 1.25616 0.95247 0.99886 0.96333 1.70212 1.23483 1.32298 1.14413 0.85824 0.79406 0.80458 0.78445 1.19616 1.20145 1.18784 1.20921 1.11519 0.94739 0.95343 0.92970 0.93233 0.91561 0.92545 0.92279 0.92541 0.91557 0.93234 0.92974 0.93577 0.93581 0.83388 0.91604 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.33 37.16 0.31 -1.46 16 2 C -0.07 -0.90 0.86 -154.51 -0.13 -1.03 16 3 C -0.14 -1.50 8.47 37.16 0.31 -1.19 16 4 C -0.14 -1.77 8.33 37.16 0.31 -1.46 16 5 C 0.08 1.41 3.95 37.16 0.15 1.56 16 6 O -0.31 -6.49 8.88 -20.33 -0.18 -6.67 16 7 C -0.07 -1.67 6.97 -39.70 -0.28 -1.95 16 8 C -0.11 -2.78 11.09 -17.08 -0.19 -2.97 16 9 N -0.25 -7.18 10.41 30.78 0.32 -6.86 16 10 N -0.14 -4.05 3.74 -11.43 -0.04 -4.10 16 11 C -0.32 -8.71 10.25 -14.81 -0.15 -8.86 16 12 H 0.12 2.84 7.83 -52.48 -0.41 2.43 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.78 -21.86 11.82 55.49 0.66 -21.20 16 15 Si 0.93 19.20 29.55 -169.99 -5.02 14.18 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 19 C -0.08 -2.01 11.49 -16.42 -0.19 -2.19 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 23 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.96 7.68 -51.93 -0.40 0.57 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.15 3.32 7.70 -52.48 -0.40 2.92 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.15 3.35 8.06 -52.49 -0.42 2.93 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -31.03 281.39 -4.95 -35.99 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.97 Total: 2.88 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 0.05 Total: -18.45 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.93 Total: -32.16 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.18 Total: -6.67 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.03 -4.95 -35.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.916 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds