Wall clock time and date at job start Mon Mar 30 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53002 * 109.46943 * 239.99927 * 2 1 3 5 5 C 1.52998 * 109.47315 * 120.00283 * 2 1 3 6 6 O 1.42901 * 109.47043 * 59.99765 * 5 2 1 7 7 C 1.36185 * 116.99765 * 180.02562 * 6 5 2 8 8 C 1.40501 * 126.05386 * 359.69349 * 7 6 5 9 9 N 1.30949 * 108.41047 * 179.81615 * 8 7 6 10 10 N 1.40084 * 108.35780 * 0.43821 * 9 8 7 11 11 C 1.37328 * 126.09565 * 179.71949 * 10 9 8 12 12 H 1.08003 * 119.99935 * 180.02562 * 11 10 9 13 13 C 1.38984 * 120.00421 * 0.02562 * 11 10 9 14 14 N 1.31299 * 119.99734 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00436 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47328 * 89.99452 * 15 13 11 17 17 H 1.48503 * 109.47012 * 209.99889 * 15 13 11 18 18 H 1.48501 * 109.46883 * 329.99784 * 15 13 11 19 19 C 1.35507 * 126.04986 * 179.97438 * 7 6 5 20 20 H 1.08996 * 109.46998 * 300.00109 * 1 2 3 21 21 H 1.09006 * 109.47255 * 60.00040 * 1 2 3 22 22 H 1.09003 * 109.47378 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46896 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.47524 * 300.00119 * 3 2 1 25 25 H 1.08996 * 109.47254 * 60.00048 * 3 2 1 26 26 H 1.08994 * 109.47651 * 299.99823 * 4 2 1 27 27 H 1.09005 * 109.46853 * 60.00424 * 4 2 1 28 28 H 1.09005 * 109.47456 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.46613 * 300.00032 * 5 2 1 30 30 H 1.08999 * 109.47410 * 179.97438 * 5 2 1 31 31 H 1.08004 * 125.79209 * 359.97438 * 8 7 6 32 32 H 0.96998 * 120.00045 * 180.02562 * 14 13 11 33 33 H 1.07998 * 126.23799 * 359.96498 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 8 1.5636 -2.0686 1.2491 7 6 1.9292 -2.8536 2.3002 8 6 2.7364 -2.4637 3.3821 9 7 2.8636 -3.4846 4.1922 10 7 2.1527 -4.5654 3.6549 11 6 2.0470 -5.8187 4.2064 12 1 1.4708 -6.5824 3.7052 13 6 2.6814 -6.1043 5.4095 14 7 3.3823 -5.1760 6.0186 15 14 2.5383 -7.8092 6.1594 16 1 3.6442 -8.6645 5.6589 17 1 2.6212 -7.7079 7.6386 18 1 1.2355 -8.4104 5.7766 19 6 1.5831 -4.1506 2.4851 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1393 28 1 3.1300 -0.7209 -1.2496 29 1 1.6766 -0.2074 2.1392 30 1 3.1300 -0.7217 1.2490 31 1 3.1752 -1.4869 3.5230 32 1 3.8254 -5.3754 6.8581 33 1 0.9685 -4.7474 1.8274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:25 Heat of formation + Delta-G solvation = 6.211266 kcal Electronic energy + Delta-G solvation = -15258.013737 eV Core-core repulsion = 12705.910917 eV Total energy + Delta-G solvation = -2552.102820 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54329 -39.45116 -36.89940 -35.24927 -32.26155 -29.98661 -28.12253 -28.09217 -27.17842 -26.64680 -22.61692 -21.47355 -20.10266 -19.32457 -17.68038 -17.12756 -16.64638 -16.06661 -15.70078 -15.27069 -14.96082 -14.63456 -14.43127 -14.29031 -13.51869 -13.09446 -13.02626 -12.85455 -12.79984 -12.66233 -12.50014 -12.08711 -12.04252 -11.70483 -11.50919 -11.48621 -11.11690 -10.73042 -10.15797 -8.62966 -8.48093 -6.25167 1.29209 1.40351 1.58123 1.74915 2.09494 2.27893 2.54537 2.97315 3.06782 3.84669 3.87355 4.09879 4.26102 4.48017 4.56822 4.60795 4.73989 4.82864 4.87534 4.89957 4.95150 5.04945 5.09810 5.10792 5.19542 5.29695 5.40057 5.49283 5.52082 5.73487 6.03875 6.63620 6.98339 7.42295 7.61771 8.51999 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.073684 B = 0.005454 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.910415 B = 5132.810965 C = 5316.358539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.135 4.135 4 C -0.136 4.136 5 C 0.075 3.925 6 O -0.312 6.312 7 C -0.060 4.060 8 C -0.116 4.116 9 N -0.294 5.294 10 N -0.165 5.165 11 C -0.355 4.355 12 H 0.136 0.864 13 C -0.004 4.004 14 N -0.825 5.825 15 Si 1.020 2.980 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.247 1.247 19 C -0.094 4.094 20 H 0.052 0.948 21 H 0.074 0.926 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.172 0.828 32 H 0.278 0.722 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 6.927 -9.282 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.193 4.193 4 C -0.193 4.193 5 C -0.001 4.001 6 O -0.226 6.226 7 C -0.116 4.116 8 C -0.289 4.289 9 N -0.129 5.129 10 N 0.062 4.938 11 C -0.486 4.486 12 H 0.153 0.847 13 C -0.216 4.216 14 N -0.453 5.453 15 Si 0.839 3.161 16 H -0.188 1.188 17 H -0.198 1.198 18 H -0.170 1.170 19 C -0.240 4.240 20 H 0.071 0.929 21 H 0.093 0.907 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.189 0.811 32 H 0.087 0.913 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.738 6.545 -8.217 10.856 hybrid contribution -0.048 -0.124 -0.036 0.137 sum -2.786 6.422 -8.253 10.822 Atomic orbital electron populations 1.21787 0.93766 1.01594 1.02160 1.20639 0.96782 0.95815 0.93232 1.21805 1.01361 0.92947 1.03140 1.21788 1.00701 1.00094 0.96725 1.22795 0.97792 0.80691 0.98826 1.85790 1.72678 1.23128 1.40981 1.18321 1.08042 0.92159 0.93044 1.23964 1.07747 1.00361 0.96801 1.78012 1.19248 0.93806 1.21862 1.44767 1.28294 1.08557 1.12162 1.20593 1.35136 0.85601 1.07247 0.84671 1.26840 0.93971 1.04564 0.96177 1.70367 1.24704 1.35127 1.15104 0.84583 0.80152 0.74265 0.77147 1.18796 1.19823 1.17043 1.21485 1.11657 0.95721 0.95163 0.92929 0.90681 0.93788 0.92165 0.90093 0.92165 0.93784 0.90683 0.92929 0.93666 0.93660 0.81145 0.91259 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.33 71.98 0.60 -2.64 16 2 C -0.06 -1.59 0.86 -52.18 -0.04 -1.64 16 3 C -0.14 -2.51 8.47 71.98 0.61 -1.90 16 4 C -0.14 -3.24 8.33 71.98 0.60 -2.64 16 5 C 0.07 2.45 3.95 71.98 0.28 2.74 16 6 O -0.31 -12.98 8.88 -95.65 -0.85 -13.83 16 7 C -0.06 -2.93 6.97 22.19 0.15 -2.78 16 8 C -0.12 -6.00 11.09 85.38 0.95 -5.05 16 9 N -0.29 -17.58 10.41 -56.54 -0.59 -18.17 16 10 N -0.16 -9.51 3.74 -190.09 -0.71 -10.22 16 11 C -0.35 -19.45 10.25 84.01 0.86 -18.59 16 12 H 0.14 6.57 7.83 -2.91 -0.02 6.55 16 13 C 0.00 -0.22 5.50 84.95 0.47 0.25 16 14 N -0.82 -47.41 11.82 21.66 0.26 -47.16 16 15 Si 1.02 39.03 29.55 68.60 2.03 41.05 16 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 19 C -0.09 -4.84 11.49 83.33 0.96 -3.88 16 20 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.04 1.23 7.68 -2.39 -0.02 1.22 16 23 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.24 7.68 -2.39 -0.02 1.22 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 30 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.17 7.69 7.70 -2.91 -0.02 7.67 16 32 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.17 7.73 8.06 -2.91 -0.02 7.70 16 Total: -1.00 -68.02 281.39 6.64 -61.38 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 1.07 Total: 23.09 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 5.44 Total: -36.14 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.04 Total: -75.55 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.85 Total: -13.83 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.05 kcal Total: -68.02 6.64 -61.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.590 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds