Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 N 1.40066 * 126.04129 * 90.02824 * 5 4 2 7 7 C 1.30832 * 108.34267 * 179.97438 * 6 5 4 8 8 C 1.39815 * 108.28340 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.08083 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46899 * 264.97485 * 9 8 7 11 11 H 1.07996 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99971 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99895 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00032 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47200 * 60.00368 * 14 12 10 16 16 H 1.48498 * 109.47378 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47606 * 300.00001 * 14 12 10 18 18 C 1.35136 * 126.03489 * 269.71369 * 5 4 2 19 19 O 1.35760 * 126.19295 * 359.96690 * 18 5 4 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 23 23 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 24 24 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 25 25 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 27 27 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 28 28 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 29 29 H 1.08000 * 125.85330 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47061 * 24.97001 * 9 8 7 31 31 H 1.08997 * 109.46842 * 144.97496 * 9 8 7 32 32 H 0.97003 * 119.99976 * 179.97438 * 13 12 10 33 33 H 0.96706 * 113.99509 * 89.99721 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 7 0.4670 -2.6834 -1.6937 7 6 0.4773 -3.9699 -1.4561 8 6 1.6682 -4.2843 -0.7945 9 6 2.0913 -5.6546 -0.3315 10 6 1.7055 -5.8377 1.1137 11 1 1.2045 -5.0414 1.6440 12 6 1.9931 -7.0216 1.7593 13 7 2.6036 -7.9911 1.1138 14 14 1.5156 -7.2483 3.5509 15 1 0.0436 -7.1112 3.6921 16 1 1.9334 -8.5982 4.0076 17 1 2.1905 -6.2158 4.3777 18 6 2.3784 -3.1345 -0.6468 19 8 3.5958 -3.0143 -0.0582 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6055 -0.2617 -2.1370 28 1 3.1264 -0.6442 -1.2952 29 1 -0.3008 -4.6691 -1.7248 30 1 1.5958 -6.4122 -0.9386 31 1 3.1716 -5.7555 -0.4348 32 1 2.8062 -8.8239 1.5681 33 1 3.5576 -2.8393 0.8922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260860065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -4.846527 kcal Electronic energy + Delta-G solvation = -15455.979339 eV Core-core repulsion = 12903.397017 eV Total energy + Delta-G solvation = -2552.582322 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.23761 -38.00952 -37.46006 -35.33913 -33.10702 -31.54074 -28.65395 -28.06071 -26.97572 -24.64819 -22.26680 -21.44743 -21.20384 -18.86557 -18.32733 -17.40138 -16.56679 -16.36549 -15.76270 -15.31495 -14.72300 -14.56339 -14.28871 -13.94881 -13.85420 -13.31533 -13.16814 -13.05728 -12.81052 -12.57465 -12.43173 -12.25855 -11.92137 -11.79040 -11.55578 -11.50066 -11.20311 -10.52094 -10.05182 -9.06862 -8.10952 -6.24947 0.80640 1.42188 1.44915 1.51112 1.53411 1.91420 2.46194 3.17922 3.25890 3.63036 3.78698 3.97347 4.13414 4.43686 4.46137 4.66690 4.68978 4.76957 4.82267 4.94560 5.00872 5.12519 5.16668 5.34835 5.37941 5.42802 5.69512 5.73596 5.82140 5.91080 6.28818 6.74343 6.83282 6.87387 7.43120 8.96901 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033672 B = 0.007122 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.346989 B = 3930.613367 C = 4164.871861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.129 3.871 5 N -0.376 5.376 6 N -0.292 5.292 7 C 0.046 3.954 8 C -0.229 4.229 9 C 0.102 3.898 10 C -0.521 4.521 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.240 3.760 19 O -0.468 6.468 20 H 0.032 0.968 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.194 0.806 30 H 0.003 0.997 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 17.260 -1.171 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.194 4.194 4 C 0.009 3.991 5 N -0.170 5.170 6 N -0.117 5.117 7 C -0.138 4.138 8 C -0.241 4.241 9 C 0.063 3.937 10 C -0.559 4.559 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.787 3.213 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.192 1.192 18 C 0.072 3.928 19 O -0.273 6.273 20 H 0.051 0.949 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.211 0.789 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.073 0.927 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.711 18.072 -2.170 18.282 hybrid contribution 0.248 -1.306 1.645 2.115 sum -1.463 16.766 -0.525 16.837 Atomic orbital electron populations 1.21774 0.94796 1.01080 1.02290 1.21488 0.96764 0.97856 0.96591 1.21724 1.01617 0.92834 1.03206 1.22079 1.01327 0.74970 1.00731 1.49152 1.13801 1.07595 1.46427 1.77223 1.01448 1.09682 1.23370 1.23751 0.98076 0.93295 0.98691 1.20470 0.97113 0.96991 1.09521 1.17264 0.94363 0.87280 0.94756 1.21369 1.37796 0.99960 0.96772 0.92955 1.25893 0.95090 0.95606 1.02723 1.70084 1.42579 1.05892 1.38669 0.85550 0.78842 0.77354 0.79564 1.19529 1.20872 1.19169 1.18417 0.86097 0.88014 1.00268 1.84731 1.21268 1.93023 1.28254 0.94892 0.91834 0.91737 0.92167 0.91346 0.91475 0.91227 0.87862 0.87996 0.78894 0.97907 0.98725 0.92746 0.73456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.05 71.98 0.65 -2.58 16 2 C -0.11 -2.22 3.13 -10.79 -0.03 -2.26 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C 0.13 3.09 5.78 86.38 0.50 3.59 16 5 N -0.38 -12.85 3.22 -459.76 -1.48 -14.33 16 6 N -0.29 -10.85 11.63 -57.06 -0.66 -11.52 16 7 C 0.05 1.84 11.95 85.22 1.02 2.86 16 8 C -0.23 -10.53 5.31 -20.01 -0.11 -10.64 16 9 C 0.10 5.57 5.43 29.10 0.16 5.73 16 10 C -0.52 -29.61 9.09 25.60 0.23 -29.38 16 11 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 14 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 C 0.24 9.64 7.92 83.65 0.66 10.30 16 19 O -0.47 -17.06 13.53 -90.86 -1.23 -18.29 16 20 H 0.03 0.96 6.95 -2.39 -0.02 0.95 16 21 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.10 2.18 8.13 -2.39 -0.02 2.16 16 29 H 0.19 6.92 8.06 -2.91 -0.02 6.89 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.41 11.66 9.06 -74.05 -0.67 10.99 16 Total: -1.00 -68.50 286.36 3.57 -64.93 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.42 Total: 12.35 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.21 Total: -22.87 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.86 Total: -82.15 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.23 Total: -18.29 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.50 3.57 -64.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260860065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.085 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds