Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47125 * 2 1 4 4 C 1.53002 * 109.47148 * 240.00049 * 2 1 3 5 5 N 1.46503 * 109.47171 * 120.00084 * 2 1 3 6 6 N 1.40064 * 126.03647 * 239.97976 * 5 2 1 7 7 C 1.30836 * 108.33944 * 179.76009 * 6 5 2 8 8 C 1.39817 * 108.27945 * 0.40265 * 7 6 5 9 9 C 1.50700 * 126.07690 * 179.85887 * 8 7 6 10 10 C 1.50702 * 109.46869 * 264.68438 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.35138 * 126.03533 * 59.99658 * 5 2 1 19 19 O 1.35757 * 126.19023 * 0.02562 * 18 5 2 20 20 H 1.08997 * 109.47069 * 300.00150 * 1 2 3 21 21 H 1.09004 * 109.47191 * 60.00303 * 1 2 3 22 22 H 1.08998 * 109.47347 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47662 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47264 * 299.99860 * 3 2 1 25 25 H 1.08997 * 109.47269 * 59.99973 * 3 2 1 26 26 H 1.08998 * 109.46914 * 300.00163 * 4 2 1 27 27 H 1.08998 * 109.47192 * 60.00170 * 4 2 1 28 28 H 1.08997 * 109.47222 * 180.02562 * 4 2 1 29 29 H 1.08000 * 125.85689 * 180.23732 * 7 6 5 30 30 H 1.09004 * 109.47210 * 144.68731 * 9 8 7 31 31 H 1.08994 * 109.47551 * 24.68384 * 9 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 33 33 H 0.96699 * 114.00145 * 269.97663 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 2.8273 -0.1354 2.1957 7 6 3.0509 -1.0528 3.1013 8 6 2.4010 -2.2262 2.7066 9 6 2.3972 -3.5336 3.4561 10 6 3.4796 -4.4287 2.9099 11 1 4.1077 -4.0851 2.1013 12 6 3.6721 -5.6841 3.4467 13 7 2.9075 -6.1024 4.4316 14 14 5.0188 -6.7906 2.7748 15 1 6.3355 -6.1241 2.9400 16 1 5.0182 -8.0772 3.5165 17 1 4.7729 -7.0506 1.3336 18 6 1.7681 -1.9761 1.5298 19 8 1.0209 -2.8581 0.8181 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6766 -1.7489 -1.2492 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 3.6391 -0.9263 3.9982 30 1 1.4288 -4.0191 3.3349 31 1 2.5800 -3.3465 4.5141 32 1 3.0427 -6.9858 4.8089 33 1 0.0830 -2.8589 1.0535 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260862279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = 23.801019 kcal Electronic energy + Delta-G solvation = -15720.408950 eV Core-core repulsion = 13169.068879 eV Total energy + Delta-G solvation = -2551.340071 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82637 -36.61685 -36.50048 -33.12473 -30.49958 -29.36789 -27.49400 -27.38538 -26.17873 -22.93655 -21.76255 -19.87502 -19.10125 -17.08258 -16.26527 -15.76193 -14.93404 -14.48640 -14.31068 -13.95848 -13.35469 -12.82811 -12.56927 -12.36792 -12.32402 -12.16570 -11.96739 -11.75046 -11.37708 -11.16353 -11.08701 -10.97513 -10.59806 -10.50037 -9.72074 -9.42629 -9.31613 -8.58350 -8.28726 -7.35847 -5.90654 -3.92136 2.38448 2.83984 3.39950 3.42853 3.45644 3.59513 4.48799 4.56322 4.71435 4.81644 4.95897 5.36872 5.43280 5.43787 5.55144 5.64209 5.74220 5.75652 5.84118 6.00010 6.17175 6.26612 6.36547 6.47682 6.86531 7.20442 7.41883 7.68906 7.83250 8.05654 8.22842 8.39854 8.52123 9.11751 9.70194 11.18870 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040980 B = 0.007243 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.092790 B = 3865.066816 C = 3973.552776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 C -0.138 4.138 4 C -0.160 4.160 5 N -0.382 5.382 6 N -0.296 5.296 7 C 0.049 3.951 8 C -0.189 4.189 9 C 0.091 3.909 10 C -0.499 4.499 11 H 0.052 0.948 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.235 3.765 19 O -0.456 6.456 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.179 0.821 30 H 0.022 0.978 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 11.952 -8.393 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.218 4.218 5 N -0.178 5.178 6 N -0.121 5.121 7 C -0.135 4.135 8 C -0.201 4.201 9 C 0.053 3.947 10 C -0.538 4.538 11 H 0.070 0.930 12 C -0.144 4.144 13 N -0.540 5.540 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C 0.068 3.932 19 O -0.257 6.257 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.196 0.804 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.807 12.817 -9.045 16.407 hybrid contribution 0.126 -1.532 0.028 1.537 sum -4.681 11.285 -9.017 15.184 Atomic orbital electron populations 1.22233 0.93773 1.02910 1.02822 1.20498 0.93681 0.93277 0.82554 1.21842 1.02438 0.93161 1.02137 1.22248 1.02169 1.01792 0.95634 1.49132 1.41804 1.08039 1.18835 1.77212 1.14290 1.21850 0.98774 1.23582 0.99940 0.91211 0.98773 1.20751 1.04033 0.99269 0.95998 1.17592 0.97217 0.85923 0.93972 1.21101 1.16049 0.99039 1.17616 0.92955 1.24980 0.96391 0.97906 0.95155 1.69944 1.39219 1.19248 1.25538 0.86662 0.82526 0.79814 0.79029 1.20313 1.21342 1.20380 1.18429 1.00091 0.81877 0.92755 1.84942 1.23104 1.55846 1.61828 0.91910 0.90728 0.91836 0.91465 0.91653 0.91566 0.90745 0.91196 0.91980 0.80390 0.95987 0.95542 0.93036 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.51 37.16 0.32 -1.44 16 2 C 0.18 2.50 1.16 -131.82 -0.15 2.35 16 3 C -0.14 -1.66 7.98 37.15 0.30 -1.36 16 4 C -0.16 -2.09 8.51 37.16 0.32 -1.77 16 5 N -0.38 -6.87 3.47 -48.77 -0.17 -7.04 16 6 N -0.30 -5.73 11.64 30.61 0.36 -5.37 16 7 C 0.05 1.00 11.96 -17.39 -0.21 0.79 16 8 C -0.19 -4.29 5.31 -104.86 -0.56 -4.85 16 9 C 0.09 2.41 5.43 -29.03 -0.16 2.25 16 10 C -0.50 -14.56 9.09 -34.44 -0.31 -14.87 16 11 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 14 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.23 4.75 7.23 -16.92 -0.12 4.63 16 19 O -0.46 -8.39 11.58 -18.98 -0.22 -8.61 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.08 6.95 -51.93 -0.36 0.72 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.18 3.19 8.06 -52.49 -0.42 2.77 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.38 5.13 8.47 45.56 0.39 5.52 16 LS Contribution 280.84 15.07 4.23 4.23 Total: -1.00 -33.04 280.84 -4.85 -37.89 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.08 Total: 0.74 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.68 Total: -12.74 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.92 Total: -38.81 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.22 Total: -8.61 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.04 -4.85 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.689 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds