Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47125 * 2 1 4 4 C 1.53002 * 109.47148 * 240.00049 * 2 1 3 5 5 N 1.46503 * 109.47171 * 120.00084 * 2 1 3 6 6 N 1.40064 * 126.03647 * 239.97976 * 5 2 1 7 7 C 1.30836 * 108.33944 * 179.76009 * 6 5 2 8 8 C 1.39817 * 108.27945 * 0.40265 * 7 6 5 9 9 C 1.50700 * 126.07690 * 179.85887 * 8 7 6 10 10 C 1.50702 * 109.46869 * 264.68438 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.35138 * 126.03533 * 59.99658 * 5 2 1 19 19 O 1.35757 * 126.19023 * 0.02562 * 18 5 2 20 20 H 1.08997 * 109.47069 * 300.00150 * 1 2 3 21 21 H 1.09004 * 109.47191 * 60.00303 * 1 2 3 22 22 H 1.08998 * 109.47347 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47662 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47264 * 299.99860 * 3 2 1 25 25 H 1.08997 * 109.47269 * 59.99973 * 3 2 1 26 26 H 1.08998 * 109.46914 * 300.00163 * 4 2 1 27 27 H 1.08998 * 109.47192 * 60.00170 * 4 2 1 28 28 H 1.08997 * 109.47222 * 180.02562 * 4 2 1 29 29 H 1.08000 * 125.85689 * 180.23732 * 7 6 5 30 30 H 1.09004 * 109.47210 * 144.68731 * 9 8 7 31 31 H 1.08994 * 109.47551 * 24.68384 * 9 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 33 33 H 0.96699 * 114.00145 * 269.97663 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 2.8273 -0.1354 2.1957 7 6 3.0509 -1.0528 3.1013 8 6 2.4010 -2.2262 2.7066 9 6 2.3972 -3.5336 3.4561 10 6 3.4796 -4.4287 2.9099 11 1 4.1077 -4.0851 2.1013 12 6 3.6721 -5.6841 3.4467 13 7 2.9075 -6.1024 4.4316 14 14 5.0188 -6.7906 2.7748 15 1 6.3355 -6.1241 2.9400 16 1 5.0182 -8.0772 3.5165 17 1 4.7729 -7.0506 1.3336 18 6 1.7681 -1.9761 1.5298 19 8 1.0209 -2.8581 0.8181 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6766 -1.7489 -1.2492 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 3.6391 -0.9263 3.9982 30 1 1.4288 -4.0191 3.3349 31 1 2.5800 -3.3465 4.5141 32 1 3.0427 -6.9858 4.8089 33 1 0.0830 -2.8589 1.0535 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260862279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = 0.279051 kcal Electronic energy + Delta-G solvation = -15721.428940 eV Core-core repulsion = 13169.068879 eV Total energy + Delta-G solvation = -2552.360060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.33213 -38.04629 -37.74398 -35.26289 -32.35556 -30.88063 -28.62758 -28.36488 -27.90523 -24.90512 -23.23906 -21.43123 -20.54019 -18.48037 -18.44311 -17.21199 -16.51327 -16.25551 -15.53103 -15.18265 -14.73722 -14.41866 -14.32756 -13.90480 -13.49786 -13.32428 -13.21492 -13.11131 -12.89422 -12.72709 -12.62842 -12.36845 -12.17667 -12.15176 -11.53235 -11.46207 -11.12350 -10.52160 -10.04247 -9.06562 -8.11955 -6.23860 0.86070 1.39404 1.42311 1.47432 1.50428 1.91935 2.45987 3.16478 3.19846 3.54249 3.81040 3.93937 4.07824 4.53199 4.60037 4.68272 4.71629 4.72721 4.81057 4.84810 4.85230 5.06938 5.14931 5.24044 5.28567 5.41851 5.71357 5.78586 5.81613 5.97805 6.30847 6.77973 6.85961 6.88161 7.42986 8.95437 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040980 B = 0.007243 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.092790 B = 3865.066816 C = 3973.552776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 C -0.133 4.133 4 C -0.156 4.156 5 N -0.370 5.370 6 N -0.296 5.296 7 C 0.043 3.957 8 C -0.235 4.235 9 C 0.105 3.895 10 C -0.519 4.519 11 H 0.041 0.959 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.958 3.042 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.274 1.274 18 C 0.248 3.752 19 O -0.464 6.464 20 H 0.058 0.942 21 H 0.109 0.891 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.043 0.957 29 H 0.193 0.807 30 H -0.001 1.001 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 12.858 -10.306 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.084 3.916 3 C -0.191 4.191 4 C -0.214 4.214 5 N -0.166 5.166 6 N -0.122 5.122 7 C -0.140 4.140 8 C -0.247 4.247 9 C 0.067 3.933 10 C -0.558 4.558 11 H 0.059 0.941 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.782 3.218 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.199 1.199 18 C 0.080 3.920 19 O -0.268 6.268 20 H 0.077 0.923 21 H 0.128 0.872 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.062 0.938 29 H 0.210 0.790 30 H 0.018 0.982 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.042 13.753 -10.970 18.301 hybrid contribution 0.111 -1.762 0.539 1.846 sum -4.932 11.991 -10.431 16.641 Atomic orbital electron populations 1.22237 0.91328 1.03328 1.04375 1.21115 0.95635 0.93910 0.80896 1.21847 1.01418 0.92089 1.03702 1.22244 1.00974 1.01300 0.96886 1.49542 1.40362 1.07320 1.19368 1.77178 1.14451 1.21619 0.98933 1.23749 1.00122 0.90536 0.99631 1.20493 1.07603 0.98669 0.97926 1.17231 0.95243 0.87605 0.93222 1.21374 1.16763 1.00054 1.17563 0.94084 1.25814 0.98692 0.99315 0.95325 1.70055 1.40675 1.19826 1.26515 0.85621 0.79632 0.78043 0.78457 1.19505 1.20220 1.19900 1.18337 0.99216 0.82713 0.91781 1.84866 1.24774 1.55677 1.61499 0.92328 0.87206 0.92015 0.93059 0.87857 0.92225 0.92407 0.87225 0.93827 0.78988 0.98239 0.97639 0.92697 0.73902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.51 71.98 0.61 -2.30 16 2 C 0.17 4.12 1.16 3.60 0.00 4.12 16 3 C -0.13 -2.81 7.98 71.98 0.57 -2.23 16 4 C -0.16 -3.67 8.51 71.98 0.61 -3.05 16 5 N -0.37 -12.95 3.47 -419.53 -1.45 -14.40 16 6 N -0.30 -11.32 11.64 -57.06 -0.66 -11.98 16 7 C 0.04 1.78 11.96 85.22 1.02 2.80 16 8 C -0.24 -10.92 5.31 -20.02 -0.11 -11.03 16 9 C 0.11 5.79 5.43 29.10 0.16 5.95 16 10 C -0.52 -31.01 9.09 25.60 0.23 -30.77 16 11 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 12 C 0.01 0.36 5.46 84.66 0.46 0.82 16 13 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 14 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 18 C 0.25 10.02 7.23 83.65 0.60 10.62 16 19 O -0.46 -16.83 11.58 -90.83 -1.05 -17.88 16 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.11 1.32 8.14 -2.38 -0.02 1.31 16 22 H 0.06 1.19 6.56 -2.39 -0.02 1.17 16 23 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.56 6.95 -2.39 -0.02 1.54 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.19 7.03 8.06 -2.91 -0.02 7.00 16 30 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 33 H 0.40 10.53 8.47 -74.06 -0.63 9.90 16 Total: -1.00 -71.95 280.84 3.79 -68.17 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.47 Total: 9.93 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.17 Total: -25.07 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.83 Total: -83.11 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -1.05 Total: -17.88 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -71.95 3.79 -68.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.445 kcal (2) G-P(sol) polarization free energy of solvation -71.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds