Wall clock time and date at job start Mon Mar 30 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99543 * 2 1 4 4 C 1.46894 * 110.99947 * 123.95688 * 2 1 3 5 5 C 1.52997 * 109.47515 * 66.04655 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 N 1.30256 * 125.61792 * 89.99864 * 6 5 4 8 8 C 1.34471 * 108.70400 * 179.97438 * 7 6 5 9 9 C 1.50694 * 126.17046 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47513 * 265.00313 * 9 8 7 11 11 H 1.07999 * 119.99624 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00060 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99781 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00170 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47132 * 89.99570 * 14 12 10 16 16 H 1.48498 * 109.46720 * 209.99983 * 14 12 10 17 17 H 1.48503 * 109.47040 * 329.99604 * 14 12 10 18 18 C 1.34335 * 107.66403 * 0.02562 * 8 7 6 19 19 O 1.33958 * 125.62075 * 269.69366 * 6 5 4 20 20 H 1.08997 * 109.47044 * 296.04083 * 1 2 3 21 21 H 1.09001 * 109.47499 * 56.04429 * 1 2 3 22 22 H 1.09003 * 109.47124 * 176.04281 * 1 2 3 23 23 H 1.09002 * 109.46576 * 183.95470 * 3 2 1 24 24 H 1.09002 * 109.47680 * 303.94979 * 3 2 1 25 25 H 1.08997 * 109.47173 * 63.95741 * 3 2 1 26 26 H 1.09002 * 109.47104 * 306.04387 * 4 2 1 27 27 H 1.08998 * 109.46828 * 186.05219 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 30 30 H 1.09002 * 109.46935 * 25.00653 * 9 8 7 31 31 H 1.09004 * 109.47511 * 144.99931 * 9 8 7 32 32 H 0.97001 * 119.99795 * 180.02562 * 13 12 10 33 33 H 1.08007 * 126.44262 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1721 -3.0285 2.1370 7 7 1.5411 -3.2613 3.2524 8 6 2.3361 -3.9929 4.0531 9 6 1.9964 -4.4817 5.4374 10 6 2.5318 -3.5112 6.4585 11 1 3.0651 -2.6288 6.1370 12 6 2.3407 -3.7497 7.8029 13 7 2.8075 -2.9024 8.6939 14 14 1.4189 -5.2763 8.3590 15 1 2.3797 -6.3921 8.5513 16 1 0.7236 -4.9952 9.6407 17 1 0.4205 -5.6550 7.3269 18 6 3.4882 -4.2084 3.3967 19 8 3.3786 -3.6077 2.1955 20 1 -0.3633 0.4511 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0827 1.3432 -0.0709 24 1 1.5898 1.9164 -0.8525 25 1 1.7043 1.8723 0.9233 26 1 1.5611 -0.3873 2.0627 27 1 3.0797 -0.6610 1.1756 28 1 2.0658 -2.6214 0.0450 29 1 0.5472 -2.3475 0.9322 30 1 0.9139 -4.5573 5.5406 31 1 2.4458 -5.4619 5.5972 32 1 2.6735 -3.0704 9.6398 33 1 4.3401 -4.7633 3.7612 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260869685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:50 Heat of formation + Delta-G solvation = 19.698590 kcal Electronic energy + Delta-G solvation = -14910.149840 eV Core-core repulsion = 12358.631874 eV Total energy + Delta-G solvation = -2551.517966 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.65592 -37.77234 -34.67244 -33.19617 -32.30857 -29.96113 -27.74193 -27.38731 -24.84130 -23.09835 -21.57520 -20.62437 -19.92378 -16.89314 -16.55909 -16.03984 -15.61474 -15.42441 -14.80441 -14.39456 -13.97126 -13.39910 -13.23352 -12.77935 -12.53348 -12.06087 -12.04998 -11.84962 -11.72195 -11.58186 -11.05033 -10.88342 -10.61552 -10.31685 -9.85468 -9.79423 -9.36448 -8.59582 -8.55041 -7.95833 -6.08559 -4.07851 2.07332 3.23205 3.28239 3.36394 3.40460 3.42799 3.88189 4.40788 4.56568 4.89850 5.02071 5.07268 5.23747 5.26543 5.38141 5.47517 5.51030 5.67257 5.71333 5.78198 5.83188 5.94379 5.98485 6.36810 6.53310 6.81053 6.83724 6.89862 7.11727 7.20453 7.65686 8.46229 8.47575 8.94804 9.50755 11.04535 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.005568 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.573038 B = 5027.792731 C = 5282.524550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.056 3.944 5 C -0.010 4.010 6 C 0.164 3.836 7 N -0.472 5.472 8 C 0.040 3.960 9 C 0.055 3.945 10 C -0.513 4.513 11 H 0.071 0.929 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.264 1.264 18 C -0.099 4.099 19 O -0.212 6.212 20 H 0.030 0.970 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 2.780 -16.662 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.073 4.073 5 C -0.049 4.049 6 C -0.043 4.043 7 N -0.202 5.202 8 C -0.080 4.080 9 C 0.018 3.982 10 C -0.551 4.551 11 H 0.089 0.911 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.168 4.168 19 O -0.099 6.099 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.487 2.806 -16.807 17.221 hybrid contribution 0.091 -0.556 1.245 1.367 sum -2.396 2.250 -15.563 15.906 Atomic orbital electron populations 1.22491 0.87274 1.02656 1.00699 1.61983 1.08243 1.13995 1.42912 1.22379 1.00881 0.88530 1.00620 1.22120 1.00893 0.92179 0.92094 1.19857 1.01496 0.91986 0.91552 1.25939 0.81536 0.99581 0.97271 1.70363 1.32980 1.15368 1.01533 1.22203 0.90485 0.97167 0.98097 1.18175 0.98151 0.96342 0.85578 1.20883 1.36345 1.08419 0.89498 0.91061 1.24959 0.95146 0.96591 0.96452 1.69899 1.46104 1.36412 1.01404 0.86792 0.80745 0.83485 0.78458 1.20064 1.21122 1.18808 1.24701 1.02641 1.05577 0.83904 1.84326 1.35693 1.54331 1.35558 0.95161 0.91403 0.90885 0.91234 0.91293 0.95371 0.93362 0.90172 0.88656 0.88156 0.94484 0.95075 0.92548 0.77208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.07 0.56 0.72 16 2 N -0.55 -5.99 5.02 -251.27 -1.26 -7.25 16 3 C 0.02 0.23 9.57 60.06 0.57 0.80 16 4 C 0.06 0.71 4.94 -3.83 -0.02 0.69 16 5 C -0.01 -0.14 5.77 -27.88 -0.16 -0.30 16 6 C 0.16 2.97 7.60 -12.95 -0.10 2.87 16 7 N -0.47 -10.35 11.29 -7.36 -0.08 -10.43 16 8 C 0.04 0.92 6.30 -82.82 -0.52 0.40 16 9 C 0.06 1.38 4.59 -29.04 -0.13 1.25 16 10 C -0.51 -14.94 9.65 -34.44 -0.33 -15.28 16 11 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 14 Si 0.88 21.48 27.47 -169.99 -4.67 16.82 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 18 C -0.10 -1.95 12.08 29.36 0.35 -1.59 16 19 O -0.21 -3.93 10.77 5.39 0.06 -3.87 16 20 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 21 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 22 H 0.07 0.66 6.47 -51.93 -0.34 0.33 16 23 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 24 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 27 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.23 6.55 -51.93 -0.34 0.89 16 30 H 0.04 0.95 7.20 -51.93 -0.37 0.57 16 31 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.21 3.43 8.06 -52.48 -0.42 3.00 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -32.88 281.66 -5.64 -38.51 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.83 Total: -2.51 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.13 Total: -8.48 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.57 Total: -44.71 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.06 Total: -3.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.88 -5.64 -38.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.211 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds