Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99543 * 2 1 4 4 C 1.46894 * 110.99947 * 123.95688 * 2 1 3 5 5 C 1.52997 * 109.47515 * 66.04655 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 N 1.30256 * 125.61792 * 89.99864 * 6 5 4 8 8 C 1.34471 * 108.70400 * 179.97438 * 7 6 5 9 9 C 1.50694 * 126.17046 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47513 * 265.00313 * 9 8 7 11 11 H 1.07999 * 119.99624 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00060 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99781 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00170 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47132 * 89.99570 * 14 12 10 16 16 H 1.48498 * 109.46720 * 209.99983 * 14 12 10 17 17 H 1.48503 * 109.47040 * 329.99604 * 14 12 10 18 18 C 1.34335 * 107.66403 * 0.02562 * 8 7 6 19 19 O 1.33958 * 125.62075 * 269.69366 * 6 5 4 20 20 H 1.08997 * 109.47044 * 296.04083 * 1 2 3 21 21 H 1.09001 * 109.47499 * 56.04429 * 1 2 3 22 22 H 1.09003 * 109.47124 * 176.04281 * 1 2 3 23 23 H 1.09002 * 109.46576 * 183.95470 * 3 2 1 24 24 H 1.09002 * 109.47680 * 303.94979 * 3 2 1 25 25 H 1.08997 * 109.47173 * 63.95741 * 3 2 1 26 26 H 1.09002 * 109.47104 * 306.04387 * 4 2 1 27 27 H 1.08998 * 109.46828 * 186.05219 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 30 30 H 1.09002 * 109.46935 * 25.00653 * 9 8 7 31 31 H 1.09004 * 109.47511 * 144.99931 * 9 8 7 32 32 H 0.97001 * 119.99795 * 180.02562 * 13 12 10 33 33 H 1.08007 * 126.44262 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1721 -3.0285 2.1370 7 7 1.5411 -3.2613 3.2524 8 6 2.3361 -3.9929 4.0531 9 6 1.9964 -4.4817 5.4374 10 6 2.5318 -3.5112 6.4585 11 1 3.0651 -2.6288 6.1370 12 6 2.3407 -3.7497 7.8029 13 7 2.8075 -2.9024 8.6939 14 14 1.4189 -5.2763 8.3590 15 1 2.3797 -6.3921 8.5513 16 1 0.7236 -4.9952 9.6407 17 1 0.4205 -5.6550 7.3269 18 6 3.4882 -4.2084 3.3967 19 8 3.3786 -3.6077 2.1955 20 1 -0.3633 0.4511 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0827 1.3432 -0.0709 24 1 1.5898 1.9164 -0.8525 25 1 1.7043 1.8723 0.9233 26 1 1.5611 -0.3873 2.0627 27 1 3.0797 -0.6610 1.1756 28 1 2.0658 -2.6214 0.0450 29 1 0.5472 -2.3475 0.9322 30 1 0.9139 -4.5573 5.5406 31 1 2.4458 -5.4619 5.5972 32 1 2.6735 -3.0704 9.6398 33 1 4.3401 -4.7633 3.7612 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260869685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = -6.171599 kcal Electronic energy + Delta-G solvation = -14911.271656 eV Core-core repulsion = 12358.631874 eV Total energy + Delta-G solvation = -2552.639781 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.19727 -38.67599 -36.39569 -34.99370 -33.86802 -31.69809 -29.03751 -28.48260 -25.95078 -25.08106 -22.69827 -22.07413 -21.44134 -19.06509 -18.03443 -17.52468 -16.61312 -16.55276 -16.30697 -15.75654 -15.46756 -14.86936 -14.55536 -14.36861 -13.94207 -13.51285 -13.37460 -12.95242 -12.86278 -12.59964 -12.53456 -12.46502 -12.14630 -11.96658 -11.78126 -11.51096 -11.39004 -10.81512 -9.58269 -9.42629 -8.33213 -6.39751 0.58013 1.36415 1.39691 1.51855 1.78884 1.86007 2.34255 2.84663 3.01056 3.31459 3.87070 3.99034 4.18299 4.18681 4.29513 4.44188 4.51807 4.64298 4.70509 4.76828 4.81672 4.90898 4.92651 5.00666 5.04166 5.10939 5.29293 5.43019 5.53973 5.91185 6.01458 6.19981 6.63689 6.89345 7.23484 8.83669 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.005568 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.573038 B = 5027.792731 C = 5282.524550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.547 5.547 3 C 0.021 3.979 4 C 0.062 3.938 5 C -0.005 4.005 6 C 0.180 3.820 7 N -0.512 5.512 8 C -0.006 4.006 9 C 0.064 3.936 10 C -0.525 4.525 11 H 0.021 0.979 12 C 0.010 3.990 13 N -0.948 5.948 14 Si 0.955 3.045 15 H -0.255 1.255 16 H -0.282 1.282 17 H -0.250 1.250 18 C -0.083 4.083 19 O -0.207 6.207 20 H 0.019 0.981 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.269 0.731 33 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 1.512 -18.332 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.271 5.271 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.044 4.044 6 C -0.028 4.028 7 N -0.243 5.243 8 C -0.124 4.124 9 C 0.026 3.974 10 C -0.563 4.563 11 H 0.040 0.960 12 C -0.187 4.187 13 N -0.588 5.588 14 Si 0.777 3.223 15 H -0.179 1.179 16 H -0.208 1.208 17 H -0.174 1.174 18 C -0.152 4.152 19 O -0.094 6.094 20 H 0.038 0.962 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.130 0.870 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.925 1.542 -18.495 18.788 hybrid contribution 0.265 -0.015 1.672 1.693 sum -2.660 1.528 -16.823 17.100 Atomic orbital electron populations 1.22585 0.86397 1.03358 1.01061 1.62032 1.09060 1.14670 1.41309 1.22473 1.01294 0.87789 1.01112 1.21976 1.00675 0.92194 0.91840 1.20106 1.02193 0.91468 0.90591 1.26841 0.80769 0.98000 0.97218 1.70291 1.34296 1.16692 1.02984 1.22078 0.92465 0.99769 0.98138 1.17963 0.97312 0.96176 0.85954 1.21064 1.36238 1.07837 0.91130 0.96046 1.25979 0.95973 1.00469 0.96275 1.70056 1.47770 1.38955 1.02035 0.85588 0.79679 0.78954 0.78038 1.17906 1.20759 1.17384 1.25143 1.02214 1.04320 0.83551 1.84367 1.35828 1.54158 1.35004 0.96222 0.89374 0.90327 0.90847 0.89274 0.96152 0.96024 0.90393 0.85876 0.86980 0.95376 0.92900 0.92159 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.32 127.69 1.19 1.43 16 2 N -0.55 -10.98 5.02 -948.87 -4.76 -15.74 16 3 C 0.02 0.36 9.57 127.69 1.22 1.59 16 4 C 0.06 1.54 4.94 86.30 0.43 1.96 16 5 C -0.01 -0.13 5.77 29.85 0.17 0.04 16 6 C 0.18 6.33 7.60 88.34 0.67 7.00 16 7 N -0.51 -22.52 11.29 -292.00 -3.30 -25.82 16 8 C -0.01 -0.27 6.30 41.26 0.26 -0.01 16 9 C 0.06 3.18 4.59 29.10 0.13 3.32 16 10 C -0.52 -31.40 9.65 25.60 0.25 -31.15 16 11 H 0.02 1.44 7.98 -2.91 -0.02 1.41 16 12 C 0.01 0.61 5.47 84.65 0.46 1.07 16 13 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 14 Si 0.96 44.04 27.47 68.60 1.88 45.93 16 15 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.25 -10.92 6.54 99.48 0.65 -10.26 16 18 C -0.08 -3.16 12.08 66.93 0.81 -2.36 16 19 O -0.21 -7.32 10.77 -3.61 -0.04 -7.36 16 20 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 21 H 0.09 1.17 8.12 -2.39 -0.02 1.16 16 22 H 0.08 1.26 6.47 -2.39 -0.02 1.25 16 23 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 24 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 25 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 27 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 28 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.11 2.52 6.55 -2.39 -0.02 2.51 16 30 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 31 H 0.05 2.37 7.57 -2.38 -0.02 2.36 16 32 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 33 H 0.24 7.32 8.06 -2.91 -0.02 7.30 16 Total: -1.00 -72.71 281.66 0.71 -72.01 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.03 Total: 7.83 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.59 Total: -17.11 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -7.76 Total: -101.30 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.04 Total: -7.36 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -72.71 0.71 -72.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.836 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds