Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00277 * 2 1 4 4 C 1.46894 * 111.00167 * 123.95821 * 2 1 3 5 5 C 1.52997 * 109.47515 * 169.99883 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 N 1.30260 * 125.61558 * 89.69574 * 6 5 4 8 8 C 1.34477 * 108.69507 * 179.84061 * 7 6 5 9 9 C 1.34328 * 107.67295 * 0.41683 * 8 7 6 10 10 C 1.50697 * 126.44658 * 179.76729 * 9 8 7 11 11 C 1.50696 * 109.47041 * 89.97644 * 10 9 8 12 12 H 1.08002 * 120.00279 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00581 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99560 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00434 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47049 * 60.00509 * 15 13 11 17 17 H 1.48504 * 109.47143 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47240 * 300.00365 * 15 13 11 19 19 O 1.33962 * 125.61919 * 269.99832 * 6 5 4 20 20 H 1.08994 * 109.47059 * 296.04949 * 1 2 3 21 21 H 1.09007 * 109.46908 * 56.04351 * 1 2 3 22 22 H 1.08999 * 109.47331 * 176.03847 * 1 2 3 23 23 H 1.08994 * 109.47768 * 183.95429 * 3 2 1 24 24 H 1.09001 * 109.47114 * 303.96032 * 3 2 1 25 25 H 1.09004 * 109.46895 * 63.95547 * 3 2 1 26 26 H 1.09002 * 109.47104 * 49.99615 * 4 2 1 27 27 H 1.08998 * 109.46828 * 290.00448 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 30 30 H 1.08006 * 126.16057 * 180.16807 * 8 7 6 31 31 H 1.08996 * 109.47286 * 209.97666 * 10 9 8 32 32 H 1.09007 * 109.47347 * 329.98211 * 10 9 8 33 33 H 0.96992 * 120.00367 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0446 -1.7408 2.1375 7 7 4.1396 -3.0384 2.1999 8 6 4.6693 -3.3752 3.3891 9 6 4.8935 -2.2402 4.0718 10 6 5.4750 -2.1291 5.4576 11 6 6.9750 -2.0171 5.3653 12 1 7.4588 -2.0252 4.3998 13 6 7.7299 -1.9033 6.5135 14 7 7.1408 -1.8929 7.6893 15 14 9.5891 -1.7639 6.3991 16 1 9.9474 -0.5560 5.6131 17 1 10.1622 -1.6532 7.7646 18 1 10.1357 -2.9709 5.7286 19 8 4.5008 -1.2197 3.2843 20 1 -0.3633 0.4513 0.9232 21 1 -0.3633 0.5741 -0.8525 22 1 -0.3634 -1.0252 -0.0710 23 1 3.0828 1.3432 -0.0709 24 1 1.5898 1.9163 -0.8524 25 1 1.7045 1.8723 0.9234 26 1 1.5089 -1.7407 1.1755 27 1 1.7975 -0.2249 2.0627 28 1 3.9910 0.0192 0.9322 29 1 3.7023 -1.4966 0.0450 30 1 4.8737 -4.3778 3.7348 31 1 5.0742 -1.2430 5.9499 32 1 5.2117 -3.0157 6.0344 33 1 7.6717 -1.8132 8.4971 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260926772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = 13.226853 kcal Electronic energy + Delta-G solvation = -14845.849847 eV Core-core repulsion = 12294.051246 eV Total energy + Delta-G solvation = -2551.798601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.53467 -37.78832 -34.00290 -33.70050 -32.36749 -30.22801 -27.76101 -26.79712 -24.74328 -23.02987 -21.63795 -21.00478 -20.05459 -16.78110 -16.41251 -15.82808 -15.59871 -15.18864 -14.78381 -14.63578 -13.80173 -13.36839 -12.89231 -12.56867 -12.47416 -12.25938 -11.98867 -11.83580 -11.73274 -11.47254 -11.04010 -10.87630 -10.78485 -10.55310 -10.21489 -9.72410 -9.64316 -8.56890 -8.56584 -7.78830 -6.18914 -4.24855 2.26670 3.26423 3.27354 3.30335 3.36072 3.44833 3.89076 4.34450 4.68375 4.88285 4.97504 5.10487 5.16591 5.21937 5.38375 5.43717 5.48459 5.67734 5.75118 5.78891 5.88378 6.01466 6.08796 6.42883 6.76724 6.80143 6.82069 7.06912 7.24576 7.40485 7.75065 8.05826 8.47189 8.77426 9.39922 10.90603 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048878 B = 0.004990 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.720596 B = 5609.342099 C = 5748.247870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.017 3.983 4 C 0.058 3.942 5 C -0.008 4.008 6 C 0.139 3.861 7 N -0.475 5.475 8 C -0.086 4.086 9 C 0.027 3.973 10 C 0.091 3.909 11 C -0.523 4.523 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 O -0.204 6.204 20 H 0.026 0.974 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.177 0.823 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 4.167 -11.776 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.131 4.131 4 C -0.070 4.070 5 C -0.047 4.047 6 C -0.068 4.068 7 N -0.205 5.205 8 C -0.224 4.224 9 C -0.026 4.026 10 C 0.054 3.946 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.730 3.270 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 O -0.090 6.090 20 H 0.044 0.956 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.194 0.806 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.003 3.601 -12.483 16.397 hybrid contribution 1.007 0.819 1.394 1.905 sum -8.996 4.420 -11.089 14.948 Atomic orbital electron populations 1.22375 0.87042 1.02432 1.00479 1.61947 1.08065 1.14019 1.43078 1.22497 1.01372 0.88686 1.00582 1.22126 0.94409 0.99000 0.91508 1.19799 0.94260 0.98973 0.91644 1.25667 1.03067 0.89027 0.89012 1.70234 1.17197 1.11834 1.21254 1.22858 1.08069 1.00149 0.91320 1.24851 0.96687 0.84536 0.96543 1.18043 0.95356 0.99890 0.81340 1.20939 0.89908 1.52037 0.93225 0.92242 1.24979 0.99308 0.94647 0.95051 1.69925 1.36149 1.49319 0.97582 0.86468 0.84363 0.78937 0.77233 1.20042 1.21000 1.19925 1.84405 1.61319 1.38587 1.24703 0.95575 0.91298 0.91191 0.90809 0.91350 0.95374 0.89850 0.94163 0.89564 0.87549 0.80622 0.94258 0.92469 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.06 0.57 0.80 16 2 N -0.55 -5.93 5.02 -251.27 -1.26 -7.19 16 3 C 0.02 0.16 9.32 60.06 0.56 0.72 16 4 C 0.06 0.73 4.94 -3.83 -0.02 0.71 16 5 C -0.01 -0.12 5.77 -27.88 -0.16 -0.28 16 6 C 0.14 2.64 7.60 -12.94 -0.10 2.55 16 7 N -0.48 -9.76 11.29 -11.10 -0.13 -9.89 16 8 C -0.09 -1.85 11.80 -17.77 -0.21 -2.06 16 9 C 0.03 0.63 6.58 -35.69 -0.23 0.40 16 10 C 0.09 2.33 5.53 -29.04 -0.16 2.17 16 11 C -0.52 -14.59 9.09 -34.44 -0.31 -14.91 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 15 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 O -0.20 -4.48 10.78 5.36 0.06 -4.42 16 20 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 21 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 22 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 23 H 0.07 0.68 6.47 -51.93 -0.34 0.34 16 24 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 1.07 8.06 -51.93 -0.42 0.66 16 27 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.09 1.08 6.55 -51.93 -0.34 0.74 16 29 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.18 3.42 8.06 -52.48 -0.42 2.99 16 31 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 285.27 15.07 4.30 4.30 Total: -1.00 -30.26 285.27 -6.33 -36.59 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.86 Total: -2.44 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.16 Total: -8.26 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.65 Total: -41.96 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: 0.06 Total: -4.42 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.26 -6.33 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.815 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds