Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00277 * 2 1 4 4 C 1.46894 * 111.00167 * 123.95821 * 2 1 3 5 5 C 1.52997 * 109.47515 * 169.99883 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 N 1.30260 * 125.61558 * 89.69574 * 6 5 4 8 8 C 1.34477 * 108.69507 * 179.84061 * 7 6 5 9 9 C 1.34328 * 107.67295 * 0.41683 * 8 7 6 10 10 C 1.50697 * 126.44658 * 179.76729 * 9 8 7 11 11 C 1.50696 * 109.47041 * 89.97644 * 10 9 8 12 12 H 1.08002 * 120.00279 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00581 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99560 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00434 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47049 * 60.00509 * 15 13 11 17 17 H 1.48504 * 109.47143 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47240 * 300.00365 * 15 13 11 19 19 O 1.33962 * 125.61919 * 269.99832 * 6 5 4 20 20 H 1.08994 * 109.47059 * 296.04949 * 1 2 3 21 21 H 1.09007 * 109.46908 * 56.04351 * 1 2 3 22 22 H 1.08999 * 109.47331 * 176.03847 * 1 2 3 23 23 H 1.08994 * 109.47768 * 183.95429 * 3 2 1 24 24 H 1.09001 * 109.47114 * 303.96032 * 3 2 1 25 25 H 1.09004 * 109.46895 * 63.95547 * 3 2 1 26 26 H 1.09002 * 109.47104 * 49.99615 * 4 2 1 27 27 H 1.08998 * 109.46828 * 290.00448 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 30 30 H 1.08006 * 126.16057 * 180.16807 * 8 7 6 31 31 H 1.08996 * 109.47286 * 209.97666 * 10 9 8 32 32 H 1.09007 * 109.47347 * 329.98211 * 10 9 8 33 33 H 0.96992 * 120.00367 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0446 -1.7408 2.1375 7 7 4.1396 -3.0384 2.1999 8 6 4.6693 -3.3752 3.3891 9 6 4.8935 -2.2402 4.0718 10 6 5.4750 -2.1291 5.4576 11 6 6.9750 -2.0171 5.3653 12 1 7.4588 -2.0252 4.3998 13 6 7.7299 -1.9033 6.5135 14 7 7.1408 -1.8929 7.6893 15 14 9.5891 -1.7639 6.3991 16 1 9.9474 -0.5560 5.6131 17 1 10.1622 -1.6532 7.7646 18 1 10.1357 -2.9709 5.7286 19 8 4.5008 -1.2197 3.2843 20 1 -0.3633 0.4513 0.9232 21 1 -0.3633 0.5741 -0.8525 22 1 -0.3634 -1.0252 -0.0710 23 1 3.0828 1.3432 -0.0709 24 1 1.5898 1.9163 -0.8524 25 1 1.7045 1.8723 0.9234 26 1 1.5089 -1.7407 1.1755 27 1 1.7975 -0.2249 2.0627 28 1 3.9910 0.0192 0.9322 29 1 3.7023 -1.4966 0.0450 30 1 4.8737 -4.3778 3.7348 31 1 5.0742 -1.2430 5.9499 32 1 5.2117 -3.0157 6.0344 33 1 7.6717 -1.8132 8.4971 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260926772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = -8.666842 kcal Electronic energy + Delta-G solvation = -14846.799229 eV Core-core repulsion = 12294.051246 eV Total energy + Delta-G solvation = -2552.747983 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.21097 -38.67026 -35.71794 -35.63913 -33.82518 -31.94960 -28.53135 -28.40190 -26.11072 -24.80556 -23.08009 -22.28625 -21.58650 -18.77533 -17.95221 -17.44262 -16.75365 -16.53162 -16.21548 -15.70374 -15.17095 -14.80488 -14.41656 -14.24097 -13.96472 -13.46581 -13.35275 -12.94213 -12.87023 -12.66182 -12.58821 -12.55388 -12.18026 -12.15454 -11.93336 -11.72678 -11.45696 -10.68360 -9.53846 -9.38528 -8.29727 -6.45004 0.60281 1.40004 1.42220 1.50728 1.72692 1.82455 2.37441 2.85364 3.02645 3.35721 3.86364 3.98103 4.20235 4.24537 4.31210 4.41915 4.50884 4.62145 4.70688 4.74276 4.81402 4.89542 5.02366 5.03833 5.08197 5.16040 5.40473 5.49219 5.60041 5.94356 5.96088 6.04414 6.62162 6.80885 7.24305 8.79401 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048878 B = 0.004990 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.720596 B = 5609.342099 C = 5748.247870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.552 5.552 3 C 0.014 3.986 4 C 0.066 3.934 5 C -0.006 4.006 6 C 0.161 3.839 7 N -0.491 5.491 8 C -0.075 4.075 9 C -0.008 4.008 10 C 0.101 3.899 11 C -0.545 4.545 12 H 0.053 0.947 13 C 0.015 3.985 14 N -0.922 5.922 15 Si 0.970 3.030 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.266 1.266 19 O -0.218 6.218 20 H 0.025 0.975 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.024 0.976 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.192 0.808 31 H 0.016 0.984 32 H 0.048 0.952 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 4.603 -13.384 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.277 5.277 3 C -0.134 4.134 4 C -0.063 4.063 5 C -0.044 4.044 6 C -0.046 4.046 7 N -0.221 5.221 8 C -0.212 4.212 9 C -0.061 4.061 10 C 0.063 3.937 11 C -0.583 4.583 12 H 0.071 0.929 13 C -0.185 4.185 14 N -0.561 5.561 15 Si 0.794 3.206 16 H -0.195 1.195 17 H -0.200 1.200 18 H -0.191 1.191 19 O -0.106 6.106 20 H 0.044 0.956 21 H 0.105 0.895 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.209 0.791 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.814 4.025 -14.098 17.643 hybrid contribution 0.837 0.724 1.797 2.110 sum -8.976 4.749 -12.301 15.951 Atomic orbital electron populations 1.22456 0.85805 1.02998 1.01240 1.61966 1.09233 1.14688 1.41766 1.22583 1.01575 0.88021 1.01253 1.21959 0.93253 0.99099 0.91962 1.20093 0.95225 0.99287 0.89824 1.26808 1.00037 0.89139 0.88651 1.70313 1.18373 1.12580 1.20822 1.23120 1.06464 1.00340 0.91269 1.24364 0.99751 0.85511 0.96493 1.17703 0.94700 0.98305 0.82951 1.21213 0.91222 1.52627 0.93205 0.92893 1.25856 1.04232 0.93890 0.94521 1.70025 1.38067 1.49708 0.98292 0.85418 0.78349 0.79169 0.77671 1.19509 1.20010 1.19098 1.84383 1.61825 1.38722 1.25634 0.95635 0.89534 0.90966 0.90670 0.89547 0.95686 0.90327 0.95155 0.87864 0.86062 0.79108 0.96534 0.93387 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.57 127.69 1.22 1.58 16 2 N -0.55 -10.70 5.02 -948.88 -4.76 -15.46 16 3 C 0.01 0.22 9.32 127.69 1.19 1.41 16 4 C 0.07 1.55 4.94 86.30 0.43 1.98 16 5 C -0.01 -0.16 5.77 29.85 0.17 0.02 16 6 C 0.16 5.95 7.60 88.34 0.67 6.62 16 7 N -0.49 -19.69 11.29 -303.83 -3.43 -23.12 16 8 C -0.07 -3.21 11.80 83.39 0.98 -2.22 16 9 C -0.01 -0.39 6.58 24.79 0.16 -0.23 16 10 C 0.10 5.35 5.53 29.10 0.16 5.51 16 11 C -0.55 -30.90 9.09 25.60 0.23 -30.67 16 12 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 13 C 0.01 0.82 5.46 84.66 0.46 1.29 16 14 N -0.92 -53.56 13.29 21.45 0.28 -53.28 16 15 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 O -0.22 -9.61 10.78 -3.72 -0.04 -9.66 16 20 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 21 H 0.09 1.05 8.12 -2.38 -0.02 1.03 16 22 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 23 H 0.07 1.19 6.47 -2.39 -0.02 1.18 16 24 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 25 H 0.02 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.08 1.91 8.06 -2.39 -0.02 1.89 16 27 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 28 H 0.10 2.35 6.55 -2.39 -0.02 2.34 16 29 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.19 7.35 8.06 -2.91 -0.02 7.32 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -64.03 285.27 0.84 -63.19 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.08 Total: 7.77 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 5.68 Total: -14.73 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -7.91 Total: -91.86 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.04 Total: -9.66 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.03 0.84 -63.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.519 kcal (2) G-P(sol) polarization free energy of solvation -64.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds