Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35281 * 117.00340 * 2 1 4 4 C 1.40251 * 126.52239 * 266.38519 * 3 2 1 5 5 C 1.41288 * 126.62018 * 359.96414 * 4 3 2 6 6 H 1.07994 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.39598 * 119.99753 * 179.97438 * 5 4 3 8 8 N 1.31149 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99860 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47334 * 119.99894 * 9 7 5 12 12 H 1.48508 * 109.47029 * 240.00098 * 9 7 5 13 13 C 1.41842 * 106.75727 * 179.97438 * 4 3 2 14 14 N 1.30262 * 108.19112 * 0.02562 * 13 4 3 15 15 N 1.34923 * 126.51611 * 86.36314 * 3 2 1 16 16 C 1.46497 * 125.68865 * 0.02562 * 15 3 2 17 17 C 1.52996 * 109.47288 * 84.27954 * 16 15 3 18 18 C 1.53008 * 109.47097 * 65.51137 * 17 16 15 19 19 C 1.53003 * 109.47404 * 185.51298 * 17 16 15 20 20 H 1.09003 * 109.46706 * 64.94958 * 1 2 3 21 21 H 1.08994 * 109.47032 * 184.94613 * 1 2 3 22 22 H 1.08992 * 109.47104 * 304.95074 * 1 2 3 23 23 H 0.96997 * 120.00339 * 180.02562 * 8 7 5 24 24 H 1.08008 * 125.90480 * 180.02562 * 13 4 3 25 25 H 1.09002 * 109.47164 * 204.28035 * 16 15 3 26 26 H 1.09003 * 109.47407 * 324.27977 * 16 15 3 27 27 H 1.08995 * 109.47274 * 305.51406 * 17 16 15 28 28 H 1.08990 * 109.47027 * 303.69744 * 18 17 16 29 29 H 1.09006 * 109.46332 * 63.69543 * 18 17 16 30 30 H 1.08993 * 109.47209 * 183.68848 * 18 17 16 31 31 H 1.08993 * 109.46878 * 60.00003 * 19 17 16 32 32 H 1.09000 * 109.46976 * 180.02562 * 19 17 16 33 33 H 1.09003 * 109.47225 * 300.00108 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 6 2.4855 1.9167 -1.1249 5 6 2.3761 1.5127 -2.4743 6 1 1.9133 0.5682 -2.7192 7 6 2.8662 2.3344 -3.4908 8 7 3.4277 3.4816 -3.1933 9 14 2.7222 1.7998 -5.2749 10 1 2.0547 0.4750 -5.3424 11 1 1.9201 2.7976 -6.0275 12 1 4.0778 1.7015 -5.8732 13 6 3.0641 3.1201 -0.6462 14 7 2.9749 3.1254 0.6534 15 7 2.3465 1.9519 1.0822 16 6 2.0649 1.5929 2.4743 17 6 3.1836 0.6948 3.0058 18 6 4.4914 1.4872 3.0603 19 6 2.8231 0.2082 4.4108 20 1 -0.3633 0.4352 -0.9310 21 1 -0.3633 -1.0238 0.0886 22 1 -0.3633 0.5887 0.8423 23 1 3.7679 4.0527 -3.8997 24 1 3.5028 3.8976 -1.2541 25 1 2.0078 2.4983 3.0786 26 1 1.1153 1.0603 2.5272 27 1 3.3060 -0.1630 2.3445 28 1 4.7141 1.8892 2.0720 29 1 4.3899 2.3070 3.7716 30 1 5.3014 0.8302 3.3764 31 1 1.8916 -0.3563 4.3719 32 1 3.6204 -0.4313 4.7896 33 1 2.7007 1.0661 5.0722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260940059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = 22.421600 kcal Electronic energy + Delta-G solvation = -15785.138458 eV Core-core repulsion = 13233.738571 eV Total energy + Delta-G solvation = -2551.399887 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53646 -36.55510 -35.85839 -33.43607 -30.47876 -28.70782 -26.85183 -26.68179 -25.29484 -24.01691 -20.21639 -19.76438 -19.12685 -17.35569 -15.97742 -14.95061 -14.92503 -14.69598 -14.19618 -13.86949 -13.49955 -13.01177 -12.40603 -12.28095 -12.09812 -11.85409 -11.49054 -11.20948 -11.14583 -11.07022 -10.73303 -10.60808 -10.44496 -10.37004 -10.24659 -9.40463 -9.27932 -8.55633 -7.67406 -7.16386 -6.50336 -4.00059 2.88386 3.18833 3.24606 3.24995 3.78488 4.10559 4.31605 4.93092 5.13423 5.20882 5.38923 5.53878 5.66843 5.80523 5.86635 5.92963 6.02027 6.07927 6.09531 6.19294 6.23429 6.34724 6.60098 6.76913 6.82698 7.17633 7.46866 7.50570 7.76171 8.11413 8.61563 8.78590 9.10279 9.22455 9.45960 10.47947 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037921 B = 0.008218 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.196002 B = 3406.333650 C = 3843.769619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.293 6.293 3 C 0.054 3.946 4 C -0.007 4.007 5 C -0.420 4.420 6 H 0.072 0.928 7 C 0.065 3.935 8 N -0.835 5.835 9 Si 0.917 3.083 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.030 3.970 14 N -0.313 5.313 15 N -0.396 5.396 16 C 0.155 3.845 17 C -0.113 4.113 18 C -0.140 4.140 19 C -0.141 4.141 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.275 0.725 24 H 0.205 0.795 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -3.496 7.324 8.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.202 6.202 3 C -0.107 4.107 4 C -0.018 4.018 5 C -0.454 4.454 6 H 0.091 0.909 7 C -0.146 4.146 8 N -0.467 5.467 9 Si 0.743 3.257 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.202 1.202 13 C -0.157 4.157 14 N -0.138 5.138 15 N -0.193 5.193 16 C 0.031 3.969 17 C -0.133 4.133 18 C -0.197 4.197 19 C -0.199 4.199 20 H 0.062 0.938 21 H 0.094 0.906 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.221 0.779 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.921 -2.992 8.289 9.019 hybrid contribution -0.584 -0.583 -1.490 1.703 sum -2.505 -3.574 6.799 8.079 Atomic orbital electron populations 1.23011 0.83700 1.00718 0.99861 1.86102 1.17446 1.23459 1.93213 1.19036 1.13356 0.91294 0.87037 1.17987 0.99647 0.92285 0.91870 1.18757 1.33387 1.04102 0.89175 0.90942 1.25710 0.93499 0.94205 1.01193 1.69505 1.33015 1.09927 1.34214 0.86109 0.78460 0.79375 0.81755 1.18890 1.20286 1.20190 1.24908 1.00958 1.00243 0.89586 1.76588 1.19696 1.01980 1.15516 1.47855 1.51821 1.15858 1.03797 1.21199 0.96754 0.98296 0.80602 1.21533 0.96159 0.99066 0.96529 1.21744 0.95901 0.99148 1.02939 1.21766 1.01147 1.00789 0.96220 0.93839 0.90639 0.95480 0.91418 0.77864 0.90615 0.91642 0.90594 0.91361 0.93239 0.93632 0.92885 0.92656 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.13 101.05 1.12 1.56 16 2 O -0.29 -6.84 10.46 -17.54 -0.18 -7.02 16 3 C 0.05 1.37 7.08 -15.44 -0.11 1.26 16 4 C -0.01 -0.20 5.95 -106.60 -0.63 -0.84 16 5 C -0.42 -11.64 9.38 -37.92 -0.36 -11.99 16 6 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 7 C 0.07 1.69 5.49 -17.34 -0.10 1.59 16 8 N -0.84 -21.80 10.32 55.53 0.57 -21.23 16 9 Si 0.92 19.63 29.56 -169.99 -5.02 14.60 16 10 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 13 C 0.03 0.80 10.90 -16.84 -0.18 0.62 16 14 N -0.31 -7.86 11.77 30.95 0.36 -7.50 16 15 N -0.40 -9.21 3.12 -60.48 -0.19 -9.40 16 16 C 0.16 2.83 5.74 -4.05 -0.02 2.80 16 17 C -0.11 -1.84 3.12 -90.62 -0.28 -2.12 16 18 C -0.14 -2.31 9.13 37.16 0.34 -1.97 16 19 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 20 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.03 0.47 7.73 -51.93 -0.40 0.07 16 23 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 24 H 0.21 5.52 5.76 -52.48 -0.30 5.21 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.07 1.11 7.73 -51.93 -0.40 0.71 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.07 1.37 7.05 -51.93 -0.37 1.01 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -29.04 281.34 -4.92 -33.96 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.82 Total: 2.84 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 0.12 Total: -10.49 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.75 Total: -38.13 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.18 Total: -7.02 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.04 -4.92 -33.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.385 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds