Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35281 * 117.00340 * 2 1 4 4 C 1.40251 * 126.52239 * 266.38519 * 3 2 1 5 5 C 1.41288 * 126.62018 * 359.96414 * 4 3 2 6 6 H 1.07994 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.39598 * 119.99753 * 179.97438 * 5 4 3 8 8 N 1.31149 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99860 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47334 * 119.99894 * 9 7 5 12 12 H 1.48508 * 109.47029 * 240.00098 * 9 7 5 13 13 C 1.41842 * 106.75727 * 179.97438 * 4 3 2 14 14 N 1.30262 * 108.19112 * 0.02562 * 13 4 3 15 15 N 1.34923 * 126.51611 * 86.36314 * 3 2 1 16 16 C 1.46497 * 125.68865 * 0.02562 * 15 3 2 17 17 C 1.52996 * 109.47288 * 84.27954 * 16 15 3 18 18 C 1.53008 * 109.47097 * 65.51137 * 17 16 15 19 19 C 1.53003 * 109.47404 * 185.51298 * 17 16 15 20 20 H 1.09003 * 109.46706 * 64.94958 * 1 2 3 21 21 H 1.08994 * 109.47032 * 184.94613 * 1 2 3 22 22 H 1.08992 * 109.47104 * 304.95074 * 1 2 3 23 23 H 0.96997 * 120.00339 * 180.02562 * 8 7 5 24 24 H 1.08008 * 125.90480 * 180.02562 * 13 4 3 25 25 H 1.09002 * 109.47164 * 204.28035 * 16 15 3 26 26 H 1.09003 * 109.47407 * 324.27977 * 16 15 3 27 27 H 1.08995 * 109.47274 * 305.51406 * 17 16 15 28 28 H 1.08990 * 109.47027 * 303.69744 * 18 17 16 29 29 H 1.09006 * 109.46332 * 63.69543 * 18 17 16 30 30 H 1.08993 * 109.47209 * 183.68848 * 18 17 16 31 31 H 1.08993 * 109.46878 * 60.00003 * 19 17 16 32 32 H 1.09000 * 109.46976 * 180.02562 * 19 17 16 33 33 H 1.09003 * 109.47225 * 300.00108 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 6 2.4855 1.9167 -1.1249 5 6 2.3761 1.5127 -2.4743 6 1 1.9133 0.5682 -2.7192 7 6 2.8662 2.3344 -3.4908 8 7 3.4277 3.4816 -3.1933 9 14 2.7222 1.7998 -5.2749 10 1 2.0547 0.4750 -5.3424 11 1 1.9201 2.7976 -6.0275 12 1 4.0778 1.7015 -5.8732 13 6 3.0641 3.1201 -0.6462 14 7 2.9749 3.1254 0.6534 15 7 2.3465 1.9519 1.0822 16 6 2.0649 1.5929 2.4743 17 6 3.1836 0.6948 3.0058 18 6 4.4914 1.4872 3.0603 19 6 2.8231 0.2082 4.4108 20 1 -0.3633 0.4352 -0.9310 21 1 -0.3633 -1.0238 0.0886 22 1 -0.3633 0.5887 0.8423 23 1 3.7679 4.0527 -3.8997 24 1 3.5028 3.8976 -1.2541 25 1 2.0078 2.4983 3.0786 26 1 1.1153 1.0603 2.5272 27 1 3.3060 -0.1630 2.3445 28 1 4.7141 1.8892 2.0720 29 1 4.3899 2.3070 3.7716 30 1 5.3014 0.8302 3.3764 31 1 1.8916 -0.3563 4.3719 32 1 3.6204 -0.4313 4.7896 33 1 2.7007 1.0661 5.0722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = 4.224948 kcal Electronic energy + Delta-G solvation = -15785.927524 eV Core-core repulsion = 13233.738571 eV Total energy + Delta-G solvation = -2552.188953 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44194 -38.38748 -37.29256 -35.33277 -32.21460 -30.65317 -28.36660 -28.03236 -26.94486 -25.86916 -21.75556 -21.72103 -20.82588 -19.24220 -17.86885 -16.73959 -16.61245 -16.17731 -15.90519 -15.38383 -15.12118 -14.67173 -14.00444 -13.90239 -13.63780 -13.08709 -12.96251 -12.91789 -12.85327 -12.80038 -12.35050 -12.14005 -11.98123 -11.85985 -11.68354 -11.27331 -11.15853 -10.47671 -9.56300 -9.15673 -8.41535 -6.02835 1.05138 1.43884 1.49401 1.58385 1.99491 2.32024 2.32668 3.17005 3.53953 3.76617 3.92543 4.12059 4.34690 4.37117 4.50804 4.58350 4.71581 4.74062 4.80040 4.80515 4.97833 5.04633 5.16499 5.19197 5.40006 5.42673 5.48685 5.57621 5.93322 6.08997 6.56462 6.83066 7.10497 7.30006 7.47434 8.58527 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037921 B = 0.008218 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.196002 B = 3406.333650 C = 3843.769619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.065 3.935 4 C -0.053 4.053 5 C -0.458 4.458 6 H 0.062 0.938 7 C 0.024 3.976 8 N -0.860 5.860 9 Si 0.989 3.011 10 H -0.265 1.265 11 H -0.267 1.267 12 H -0.268 1.268 13 C 0.006 3.994 14 N -0.317 5.317 15 N -0.383 5.383 16 C 0.141 3.859 17 C -0.107 4.107 18 C -0.137 4.137 19 C -0.132 4.132 20 H 0.031 0.969 21 H 0.118 0.882 22 H 0.041 0.959 23 H 0.283 0.717 24 H 0.195 0.805 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 -4.595 8.554 10.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C -0.098 4.098 4 C -0.064 4.064 5 C -0.492 4.492 6 H 0.080 0.920 7 C -0.185 4.185 8 N -0.492 5.492 9 Si 0.811 3.189 10 H -0.189 1.189 11 H -0.192 1.192 12 H -0.193 1.193 13 C -0.179 4.179 14 N -0.143 5.143 15 N -0.180 5.180 16 C 0.020 3.980 17 C -0.127 4.127 18 C -0.195 4.195 19 C -0.189 4.189 20 H 0.049 0.951 21 H 0.136 0.864 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.211 0.789 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.772 -4.078 9.555 10.752 hybrid contribution -0.380 -0.332 -1.672 1.747 sum -3.152 -4.411 7.882 9.567 Atomic orbital electron populations 1.23210 0.80383 1.03680 0.99892 1.85984 1.20215 1.22408 1.93299 1.19153 1.12391 0.90986 0.87308 1.18373 1.01554 0.93480 0.92991 1.18875 1.35606 1.04526 0.90162 0.91975 1.26533 0.92720 0.94025 1.05215 1.69571 1.33216 1.10647 1.35723 0.85041 0.78721 0.78917 0.76218 1.18927 1.19158 1.19344 1.24710 1.02586 1.00423 0.90196 1.76510 1.20141 1.02965 1.14707 1.48251 1.49716 1.14641 1.05415 1.21719 0.98493 0.99795 0.78026 1.21471 0.95130 0.97467 0.98598 1.21714 0.96874 1.00022 1.00842 1.21700 1.02206 1.01743 0.93293 0.95063 0.86433 0.93999 0.90682 0.78899 0.88973 0.89804 0.93123 0.95643 0.91663 0.91811 0.91689 0.91266 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.84 11.13 113.37 1.26 2.10 16 2 O -0.31 -14.25 10.46 -85.66 -0.90 -15.14 16 3 C 0.07 3.35 7.08 84.71 0.60 3.95 16 4 C -0.05 -3.06 5.95 -21.15 -0.13 -3.19 16 5 C -0.46 -26.27 9.38 23.35 0.22 -26.06 16 6 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 7 C 0.02 1.25 5.49 85.12 0.47 1.71 16 8 N -0.86 -46.28 10.32 21.78 0.22 -46.06 16 9 Si 0.99 40.79 29.56 68.60 2.03 42.81 16 10 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 12 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 13 C 0.01 0.32 10.90 85.82 0.94 1.26 16 14 N -0.32 -16.25 11.77 -55.99 -0.66 -16.91 16 15 N -0.38 -17.78 3.12 -456.94 -1.42 -19.20 16 16 C 0.14 4.86 5.74 86.38 0.50 5.36 16 17 C -0.11 -3.25 3.12 -10.79 -0.03 -3.29 16 18 C -0.14 -4.35 9.13 71.98 0.66 -3.69 16 19 C -0.13 -2.74 9.19 71.98 0.66 -2.08 16 20 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 22 H 0.04 1.35 7.73 -2.39 -0.02 1.33 16 23 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 24 H 0.19 11.06 5.76 -2.91 -0.02 11.05 16 25 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.08 2.60 7.73 -2.39 -0.02 2.58 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.02 1.01 7.05 -2.39 -0.02 0.99 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -65.00 281.34 5.49 -59.51 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.08 Total: 18.91 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 5.14 Total: -23.92 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.86 Total: -82.17 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.90 Total: -15.14 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.00 5.49 -59.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.734 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds