Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47237 * 2 1 4 4 N 1.35503 * 125.88305 * 275.02428 * 3 2 1 5 5 H 0.97000 * 125.02180 * 359.97438 * 4 3 2 6 6 N 1.39758 * 109.96376 * 180.02562 * 4 3 2 7 7 C 1.46500 * 125.56593 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.46862 * 300.00089 * 7 6 4 9 9 C 1.53003 * 109.46654 * 59.99875 * 7 6 4 10 10 C 1.34878 * 108.87110 * 359.97438 * 6 4 3 11 11 O 1.21627 * 126.68296 * 180.02562 * 10 6 4 12 12 C 1.39168 * 125.89362 * 94.71430 * 3 2 1 13 13 C 1.40964 * 126.83779 * 359.97438 * 12 3 2 14 14 H 1.07999 * 120.00363 * 333.45215 * 13 12 3 15 15 C 1.39764 * 119.99714 * 153.45209 * 13 12 3 16 16 N 1.31067 * 119.99693 * 341.68595 * 15 13 12 17 17 Si 1.86792 * 119.99799 * 161.68443 * 15 13 12 18 18 H 1.48504 * 109.47016 * 90.00502 * 17 15 13 19 19 H 1.48493 * 109.47224 * 209.99985 * 17 15 13 20 20 H 1.48503 * 109.47561 * 330.00204 * 17 15 13 21 21 H 1.09003 * 109.47053 * 300.00148 * 1 2 3 22 22 H 1.08999 * 109.46663 * 60.00661 * 1 2 3 23 23 H 1.09002 * 109.46951 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47179 * 119.99876 * 2 1 3 25 25 H 1.09002 * 109.47489 * 239.99215 * 2 1 3 26 26 H 1.09000 * 109.46977 * 179.97438 * 7 6 4 27 27 H 1.08991 * 109.47437 * 59.99998 * 8 7 6 28 28 H 1.09002 * 109.46479 * 179.97438 * 8 7 6 29 29 H 1.09003 * 109.47122 * 299.99515 * 8 7 6 30 30 H 1.08997 * 109.47014 * 60.00448 * 9 7 6 31 31 H 1.09002 * 109.46379 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47271 * 299.99627 * 9 7 6 33 33 H 0.96999 * 119.99267 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2065 2.2016 -1.0936 5 1 2.0253 1.9291 -2.0068 6 7 2.6867 3.4574 -0.7118 7 6 2.9942 4.5645 -1.6207 8 6 4.0778 4.1275 -2.6084 9 6 1.7316 4.9583 -2.3900 10 6 2.8209 3.4836 0.6300 11 8 3.2138 4.4176 1.3028 12 6 2.3917 2.1592 1.1236 13 6 2.3561 1.7279 2.4652 14 1 1.6639 0.9554 2.7659 15 6 3.2165 2.3002 3.4062 16 7 4.2797 2.9555 3.0087 17 14 2.8511 2.1310 5.2302 18 1 3.4994 0.9014 5.7529 19 1 3.3807 3.3152 5.9530 20 1 1.3830 2.0419 5.4349 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5140 -0.8899 26 1 3.3499 5.4190 -1.0450 27 1 3.7217 3.2732 -3.1839 28 1 4.3062 4.9511 -3.2848 29 1 4.9772 3.8469 -2.0603 30 1 0.9596 5.2696 -1.6863 31 1 1.9603 5.7823 -3.0659 32 1 1.3755 4.1039 -2.9656 33 1 4.8766 3.3530 3.6619 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260988377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 1.272999 kcal Electronic energy + Delta-G solvation = -15983.685328 eV Core-core repulsion = 13431.368369 eV Total energy + Delta-G solvation = -2552.316959 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46245 -37.47706 -36.71722 -34.79390 -33.75470 -30.72393 -30.05193 -28.16643 -26.70764 -24.76678 -22.30854 -21.36915 -20.45695 -18.77251 -17.71242 -16.61981 -16.28132 -16.07080 -15.54365 -15.12749 -14.81149 -14.50542 -14.11308 -13.99392 -13.41970 -13.22487 -13.18627 -12.92648 -12.70113 -12.48107 -12.43155 -12.19264 -12.02785 -11.98833 -11.89411 -11.57519 -10.75321 -9.99889 -9.41570 -8.45897 -8.09930 -5.67725 1.26287 1.40520 1.42063 1.54851 1.60264 2.40481 2.76108 3.40310 3.63046 3.90673 4.08344 4.19952 4.34457 4.48483 4.65139 4.73064 4.75600 4.80017 4.84481 5.01316 5.11032 5.16329 5.26131 5.29638 5.35349 5.56643 5.62147 5.80826 5.88343 6.49982 7.08749 7.10894 7.32259 7.59328 8.07400 8.79691 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.011078 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.487573 B = 2526.991207 C = 3326.764791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 C -0.006 4.006 4 N -0.497 5.497 5 H 0.434 0.566 6 N -0.421 5.421 7 C 0.139 3.861 8 C -0.149 4.149 9 C -0.148 4.148 10 C 0.494 3.506 11 O -0.587 6.587 12 C -0.117 4.117 13 C -0.474 4.474 14 H 0.075 0.925 15 C 0.019 3.981 16 N -0.831 5.831 17 Si 0.963 3.037 18 H -0.260 1.260 19 H -0.289 1.289 20 H -0.260 1.260 21 H 0.033 0.967 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.102 -3.000 -12.267 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.115 4.115 4 N -0.228 5.228 5 H 0.279 0.721 6 N -0.243 5.243 7 C 0.038 3.962 8 C -0.207 4.207 9 C -0.205 4.205 10 C 0.290 3.710 11 O -0.468 6.468 12 C -0.129 4.129 13 C -0.508 4.508 14 H 0.093 0.907 15 C -0.192 4.192 16 N -0.460 5.460 17 Si 0.787 3.213 18 H -0.185 1.185 19 H -0.215 1.215 20 H -0.184 1.184 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.635 -2.168 -11.982 13.028 hybrid contribution 0.204 0.358 0.777 0.879 sum -4.430 -1.809 -11.205 12.184 Atomic orbital electron populations 1.21684 0.94415 1.02004 1.01188 1.19803 0.95906 0.87950 1.02689 1.20965 1.11842 0.94123 0.84584 1.42248 1.70645 1.02601 1.07327 0.72103 1.48237 1.63812 1.05409 1.06837 1.21380 0.97430 0.86613 0.90758 1.22085 0.96904 1.03352 0.98371 1.22080 0.95424 1.03156 0.99885 1.19439 0.80858 0.90416 0.80274 1.90579 1.52855 1.42553 1.60834 1.19217 1.07852 0.91765 0.94101 1.18495 1.18584 1.21200 0.92502 0.90673 1.26494 0.93837 0.94271 1.04632 1.70062 1.10454 1.28968 1.36522 0.85503 0.79415 0.77890 0.78532 1.18479 1.21483 1.18420 0.94763 0.92470 0.90473 0.91399 0.89668 0.90603 0.90908 0.88157 0.94671 0.94095 0.88214 0.90901 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.89 71.98 0.71 -3.10 16 2 C -0.02 -0.81 6.33 29.85 0.19 -0.62 16 3 C -0.01 -0.26 6.58 42.22 0.28 0.02 16 4 N -0.50 -18.62 6.92 -45.48 -0.31 -18.94 16 5 H 0.43 11.95 8.96 -213.54 -1.91 10.04 16 6 N -0.42 -18.54 3.26 -445.33 -1.45 -19.99 16 7 C 0.14 4.73 3.66 44.99 0.16 4.90 16 8 C -0.15 -3.95 9.44 71.98 0.68 -3.27 16 9 C -0.15 -3.69 9.44 71.98 0.68 -3.01 16 10 C 0.49 28.73 7.66 86.73 0.66 29.39 16 11 O -0.59 -39.05 15.21 -4.12 -0.06 -39.11 16 12 C -0.12 -6.63 5.80 -19.88 -0.12 -6.74 16 13 C -0.47 -27.88 8.84 23.31 0.21 -27.68 16 14 H 0.08 4.14 7.89 -2.91 -0.02 4.12 16 15 C 0.02 1.14 5.20 85.18 0.44 1.58 16 16 N -0.83 -53.30 10.82 21.81 0.24 -53.06 16 17 Si 0.96 45.47 29.60 68.60 2.03 47.50 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 2.49 7.82 -2.39 -0.02 2.47 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.08 2.98 7.73 -2.39 -0.02 2.96 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.26 16.02 8.30 -92.71 -0.77 15.25 16 Total: -1.00 -80.00 282.11 3.52 -76.48 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.82 Total: 15.66 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 3.90 Total: -8.53 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -1.53 Total: -92.00 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.06 Total: -39.11 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -80.00 3.52 -76.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.753 kcal (2) G-P(sol) polarization free energy of solvation -80.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds